run_all_tests.sh

#!/bin/bash
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# Script to test DeepConsensus.
# Tested with Python3.8.
# Before running this, run:
#   source install.sh

set -euo pipefail

test_mode=${1:-none}

if [[ "${test_mode}" == "simple" ]]; then
  python3 -m deepconsensus.inference.quick_inference_test
  exit 0
fi;

python3 -m deepconsensus.inference.quick_inference_test
python3 -m deepconsensus.models.data_providers_test
python3 -m deepconsensus.models.losses_and_metrics_test
python3 -m deepconsensus.models.model_inference_transforms_test
python3 -m deepconsensus.models.networks_test
python3 -m deepconsensus.postprocess.stitch_utils_test
python3 -m deepconsensus.preprocess.preprocess_test
python3 -m deepconsensus.preprocess.pre_lib_test
python3 -m deepconsensus.utils.utils_test

# These tests take longer to run.
python3 -m deepconsensus.models.model_inference_test
python3 -m deepconsensus.models.model_train_custom_loop_test
python3 -m deepconsensus.models.model_utils_test