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buildEiavProject.glue
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buildEiavProject.glue
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# Equine lentivirus extension project build
project lentivirus
# Create modules
run file glue/build/extension/equine/modulesEquine.glue
# Import sources
run file glue/build/extension/equine/sourcesEquine.glue
# Define extension references
run file glue/build/extension/equine/referencesEquine.glue
run file glue/build/extension/equine/explicitFeatureLocationsEquine.glue
# Extract and import isolate data for extension sequences
run file glue/build/extension/equine/importIsolateDataEquine.glue
# Import alignment
run file glue/build/extension/equine/alignmentEquine.glue
run file glue/build/extension/equine/createUncAlignmentEquine.glue
# Add extension set sequences constrained alignment tree
run file glue/build/extension/equine/alignmentTreeEiavGenotyping.glue
# Compute alignments
run file glue/build/extension/equine/createAlignmentsEquine.glue
# Record feature presence
run file glue/build/extension/equine/recordFeaturePresenceEquine.glue
# Import reference phylogeny
run file glue/build/extension/equine/importGenotypingPhylogenyEquine.glue
# Validate
validate
exit