| Package | genoset-boilerplate |
| Description | Determines if a genome is boilerplate (gs144) |
| Node Version | >= 0.4 |
This genoset is to be used with genomejs JSON. See the dna2json repository for more information.
This module simply exports a GQL query. Check out the GQL page for more information
This sample is just using the GQL streaming interface to figure out if a genome is a boilerplate or not.
var boilerplate = require('genoset-boilerplate');
var fs = require('fs');
var path = require('path');
var es = require('event-stream');
var JSONStream = require('JSONStream');
var jsonStream = fs.createReadStream(path.join(__dirname, "dna.json"));
var query = boilerplate();
var genoStream = query.stream();
jsonStream
.pipe(JSONStream.parse('*'))
.pipe(genoStream);
var count = 0;
genoStream.on('data', function(snp){
console.log('Analyzed', ++count, 'SNPs');
});
genoStream.on('end', function(){
console.log("There are", query.matches().length, "matches for gs144");
console.log("There is a", query.percentage(), "percent chance that genoset matches");
});(MIT License)
Copyright (c) 2013 Fractal [email protected]
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