From 50031ed6271cf1e5aefc737fd42edab51740e889 Mon Sep 17 00:00:00 2001
From: Chris Miller <chrisamiller@gmail.com>
Date: Mon, 1 Aug 2022 09:23:41 -0500
Subject: [PATCH] add normt3 workaround

---
 README.md | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/README.md b/README.md
index 5ff3d55..86807c5 100644
--- a/README.md
+++ b/README.md
@@ -2,6 +2,14 @@ An R package for inferring the subclonal architecture of tumors
 
 ## Installation instructions:
 
+As of mid-2022, the NORMT3 package, which is a dependency of sciclone/bmm, has been removed from CRAN. It can be installed manually by doing something like: 
+
+    $ wget https://cran.r-project.org/src/contrib/Archive/NORMT3/NORMT3_1.0.4.tar.gz
+    $ R CMD install NORMT3_1.0.4.tar.gz
+    
+Then proceed with the below instructions:
+
+
 Both the 'sciClone' package and it's 'bmm' dependency can be installed by doing the following:
 
     #install IRanges from bioconductor