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a few things going on here. Looks like something unrelated to ontobio for ttl->rdfxml conversion? both owltools and robot are wrappers to the owlapi, but they may use different versions? if there is a bug it should be reported on the appropriate tracker.
but I think the question here is about the obograph spec. yes, this should be clarified, and yes we should make DPs nodes as we do for OPs. Can you add to obographs?
Moving biolink/ontobio#507 to here, per this comment by @cmungall:
Example of the issue is here.
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