From bef1c89c0f12e09ce50b4ecdcbcef1fe25d1be5a Mon Sep 17 00:00:00 2001 From: pgaudet Date: Thu, 27 Jul 2023 18:48:59 +0200 Subject: [PATCH] Update gorule-0000002.md Clarified gorule-0000002 --- metadata/rules/gorule-0000002.md | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/metadata/rules/gorule-0000002.md b/metadata/rules/gorule-0000002.md index f1e30979c..a8682d9e6 100644 --- a/metadata/rules/gorule-0000002.md +++ b/metadata/rules/gorule-0000002.md @@ -21,14 +21,13 @@ examples: format: gaf input: "PomBase SPAC23H4.18c rbx1 GO:0005515 PMID:12167173 IPI PomBase:SPBC1718.01 F SCF complex, Cul4-RING and CLRC ubiquitin ligase ligase E3 subunit Rbx1 pip1 protein NCBITaxon:4896 20041130 PomBase" --- +No direct annotations to protein binding ; GO:0005515 can contain the qualifier 'NOT' in GAF 2.2 Column 4 or GPAD 2.0 Column 2. + Even if an identifier is available in the 'with' column, a qualifier only informs on the GO term, it cannot instruct users to restrict the annotation to just the protein identified in the 'with', therefore an annotation applying protein binding ; GO:0005515 with the not qualifier -implies that the annotated protein cannot bind anything. - -This is such a wide-reaching statement that few curators would want to -make. +implies that the annotated protein cannot bind anything, which is unlikely to be correct. This rule *only* applies to GO:0005515; children of this term can be qualified with not, as further information on the type of binding is