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Adding MetaCyc def xrefs as db xrefs. #28523 #29235

Merged
merged 2 commits into from
Nov 15, 2024
Merged

Adding MetaCyc def xrefs as db xrefs. #28523 #29235

merged 2 commits into from
Nov 15, 2024

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sjm41
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@sjm41 sjm41 commented Nov 15, 2024

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github-actions bot commented Nov 15, 2024

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-15/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-15/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

1,5-anhydro-D-fructose catabolic process http://purl.obolibrary.org/obo/GO_1901802

Added

3-(2,3-dihydroxyphenyl)propanoate catabolic process http://purl.obolibrary.org/obo/GO_1901791

Added

3-(3-hydroxyphenyl)propanoate catabolic process http://purl.obolibrary.org/obo/GO_1901794

Added

4-aminobenzoate biosynthetic process http://purl.obolibrary.org/obo/GO_0008153

Removed

Added

9'-cis-neoxanthin http://purl.obolibrary.org/obo/CHEBI_35306

Added

alpha-carotene http://purl.obolibrary.org/obo/CHEBI_28425

Added

alpha-carotene biosynthetic process http://purl.obolibrary.org/obo/GO_1901824

Removed

Added

anaerobic benzoate metabolic process http://purl.obolibrary.org/obo/GO_0018875

Removed

Added

astaxanthin biosynthetic process http://purl.obolibrary.org/obo/GO_1901815

Added

benzoate metabolic process http://purl.obolibrary.org/obo/GO_0018874

Removed

Added

benzoyl-CoA catabolic process http://purl.obolibrary.org/obo/GO_1901788

Added

beta-carotene biosynthetic process http://purl.obolibrary.org/obo/GO_1901812

Added

capsanthin biosynthetic process http://purl.obolibrary.org/obo/GO_1901809

Added

capsorubin biosynthetic process http://purl.obolibrary.org/obo/GO_1901866

Added

creatine biosynthetic process http://purl.obolibrary.org/obo/GO_0006601

Added

farnesyl diphosphate biosynthetic process, mevalonate pathway http://purl.obolibrary.org/obo/GO_0010142

Removed

fermentation http://purl.obolibrary.org/obo/GO_0006113

Removed

Added

glycine catabolic process to creatine http://purl.obolibrary.org/obo/GO_0019463

Removed

Added

isopentenyl diphosphate biosynthetic process, mevalonate pathway http://purl.obolibrary.org/obo/GO_0019287

Added

lincomycin biosynthetic process http://purl.obolibrary.org/obo/GO_1901774

Added

mixed acid fermentation http://purl.obolibrary.org/obo/GO_0019664

Added

neomycin biosynthetic process http://purl.obolibrary.org/obo/GO_1901158

Added

neoxanthin biosynthetic process http://purl.obolibrary.org/obo/GO_1901833

Removed

Added

p-cumate catabolic process http://purl.obolibrary.org/obo/GO_1901782

Added

pentalenolactone biosynthetic process http://purl.obolibrary.org/obo/GO_1901780

Added

phenylacetaldehyde synthase activity http://purl.obolibrary.org/obo/GO_1990055

Added

phosphatidylcholine biosynthesis from phosphatidylethanolamine http://purl.obolibrary.org/obo/GO_0090638

Added

phosphatidylcholine biosynthesis from sn-glycero-3-phosphocholine http://purl.obolibrary.org/obo/GO_0090640

Added

putrescine biosynthetic process from arginine http://purl.obolibrary.org/obo/GO_0033388

Removed

Added

putrescine biosynthetic process from arginine via N-carbamoylputrescine http://purl.obolibrary.org/obo/GO_0033390

Removed

Added

putrescine biosynthetic process from arginine, via agmatine http://purl.obolibrary.org/obo/GO_0033389

Removed

Added

putrescine biosynthetic process from arginine, via ornithine http://purl.obolibrary.org/obo/GO_0033387

Removed

Added

zeaxanthin biosynthetic process http://purl.obolibrary.org/obo/GO_1901827

Added

zeaxanthin bis(beta-D-glucoside) biosynthetic process http://purl.obolibrary.org/obo/GO_1901830

Added

@sjm41 sjm41 merged commit 91035f7 into master Nov 15, 2024
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@sjm41 sjm41 deleted the issue-28523sm3 branch November 15, 2024 08:12
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