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Tried to resolve conflicts in go_taxon_constraints.owl.
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Here's a diff of how these changes impact the classified ontology:
Ontology comparison
Left
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2024-02-06/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owlRight
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2024-02-06/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owlOntology imports
Ontology annotations
cytosolic isocitrate dehydrogenase complex (NAD+)
http://purl.obolibrary.org/obo/GO_0045243Removed
cytosolic isocitrate dehydrogenase complex (NAD+) definition "Cytosolic complex that possesses isocitrate dehydrogenase (NAD+) activity."
database_cross_reference "GOC:mah"
database_cross_reference "GOC:mtg_sensu"
cytosolic isocitrate dehydrogenase complex (NAD+) label "cytosolic isocitrate dehydrogenase complex (NAD+)"
cytosolic isocitrate dehydrogenase complex (NAD+) EquivalentTo isocitrate dehydrogenase complex (NAD+) and (part of some cytosol)
cytosolic isocitrate dehydrogenase complex (NAD+) SubClassOf isocitrate dehydrogenase complex (NAD+)
cytosolic isocitrate dehydrogenase complex (NAD+) SubClassOf cytosolic tricarboxylic acid cycle enzyme complex
Added
cytosolic isocitrate dehydrogenase complex (NAD+) term tracker item "https://github.com/geneontology/go-ontology/issues/26882"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
cytosolic isocitrate dehydrogenase complex (NAD+) term replaced by "GO:0045242"
cytosolic isocitrate dehydrogenase complex (NAD+) comment "The reason for obsoletion is that this term is unnecessarily taxon-specific."
cytosolic isocitrate dehydrogenase complex (NAD+) deprecated true
cytosolic isocitrate dehydrogenase complex (NAD+) label "obsolete cytosolic isocitrate dehydrogenase complex (NAD+)"
cytosolic isocitrate dehydrogenase complex (NAD+) definition "OBSOLETE. Cytosolic complex that possesses isocitrate dehydrogenase (NAD+) activity."
database_cross_reference "GOC:mah"
database_cross_reference "GOC:mtg_sensu"
cytosolic tricarboxylic acid cycle enzyme complex
http://purl.obolibrary.org/obo/GO_0045246Removed
cytosolic tricarboxylic acid cycle enzyme complex definition "Any of the heteromeric enzymes, located in the cytosol, that act in the tricarboxylic acid (TCA) cycle."
database_cross_reference "GOC:mah"
database_cross_reference "GOC:mtg_sensu"
cytosolic tricarboxylic acid cycle enzyme complex label "cytosolic tricarboxylic acid cycle enzyme complex"
cytosolic tricarboxylic acid cycle enzyme complex SubClassOf tricarboxylic acid cycle enzyme complex
cytosolic tricarboxylic acid cycle enzyme complex SubClassOf part of some cytosol
Added
cytosolic tricarboxylic acid cycle enzyme complex label "obsolete cytosolic tricarboxylic acid cycle enzyme complex"
cytosolic tricarboxylic acid cycle enzyme complex term tracker item "https://github.com/geneontology/go-ontology/issues/26882"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
cytosolic tricarboxylic acid cycle enzyme complex definition "OBSOLETE. Any of the heteromeric enzymes, located in the cytosol, that act in the tricarboxylic acid (TCA) cycle."
database_cross_reference "GOC:mah"
database_cross_reference "GOC:mtg_sensu"
cytosolic tricarboxylic acid cycle enzyme complex term replaced by "GO:0045239"
cytosolic tricarboxylic acid cycle enzyme complex comment "The reason for obsoletion is that this term is unnecessarily taxon-specific."
cytosolic tricarboxylic acid cycle enzyme complex deprecated true
mitochondrial isocitrate dehydrogenase complex (NAD+)
http://purl.obolibrary.org/obo/GO_0005962Removed
mitochondrial isocitrate dehydrogenase complex (NAD+) comment "Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'isocitrate dehydrogenase (NAD+) activity ; GO:0004449'."
mitochondrial isocitrate dehydrogenase complex (NAD+) label "mitochondrial isocitrate dehydrogenase complex (NAD+)"
mitochondrial isocitrate dehydrogenase complex (NAD+) definition "Mitochondrial complex that possesses isocitrate dehydrogenase (NAD+) activity."
database_cross_reference "GOC:mah"
database_cross_reference "GOC:mtg_sensu"
mitochondrial isocitrate dehydrogenase complex (NAD+) EquivalentTo isocitrate dehydrogenase complex (NAD+) and (part of some mitochondrion)
mitochondrial isocitrate dehydrogenase complex (NAD+) SubClassOf isocitrate dehydrogenase complex (NAD+)
mitochondrial isocitrate dehydrogenase complex (NAD+) SubClassOf mitochondrial tricarboxylic acid cycle enzyme complex
Added
mitochondrial isocitrate dehydrogenase complex (NAD+) deprecated true
mitochondrial isocitrate dehydrogenase complex (NAD+) definition "OBSOLETE. Mitochondrial complex that possesses isocitrate dehydrogenase (NAD+) activity."
database_cross_reference "GOC:mah"
database_cross_reference "GOC:mtg_sensu"
mitochondrial isocitrate dehydrogenase complex (NAD+) term tracker item "https://github.com/geneontology/go-ontology/issues/26882"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
mitochondrial isocitrate dehydrogenase complex (NAD+) term replaced by "GO:0045242"
mitochondrial isocitrate dehydrogenase complex (NAD+) label "obsolete mitochondrial isocitrate dehydrogenase complex (NAD+)"
mitochondrial isocitrate dehydrogenase complex (NAD+) comment "The reason for obsoletion is that this term is unnecessarily taxon-specific."
mitochondrial tricarboxylic acid cycle enzyme complex
http://purl.obolibrary.org/obo/GO_0030062Removed
mitochondrial tricarboxylic acid cycle enzyme complex label "mitochondrial tricarboxylic acid cycle enzyme complex"
mitochondrial tricarboxylic acid cycle enzyme complex definition "Any of the heteromeric enzymes, located in the mitochondrion, that act in the tricarboxylic acid (TCA) cycle."
database_cross_reference "GOC:mah"
database_cross_reference "GOC:mtg_sensu"
mitochondrial tricarboxylic acid cycle enzyme complex EquivalentTo tricarboxylic acid cycle enzyme complex and (part of some mitochondrion)
mitochondrial tricarboxylic acid cycle enzyme complex SubClassOf tricarboxylic acid cycle enzyme complex
mitochondrial tricarboxylic acid cycle enzyme complex SubClassOf part of some mitochondrial matrix
mitochondrial tricarboxylic acid cycle enzyme complex SubClassOf mitochondrial protein-containing complex
Added
mitochondrial tricarboxylic acid cycle enzyme complex term replaced by "GO:0045239"
mitochondrial tricarboxylic acid cycle enzyme complex term tracker item "https://github.com/geneontology/go-ontology/issues/26882"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
mitochondrial tricarboxylic acid cycle enzyme complex comment "The reason for obsoletion is that this term is unnecessarily taxon-specific."
mitochondrial tricarboxylic acid cycle enzyme complex deprecated true
mitochondrial tricarboxylic acid cycle enzyme complex definition "OBSOLETE. Any of the heteromeric enzymes, located in the mitochondrion, that act in the tricarboxylic acid (TCA) cycle."
database_cross_reference "GOC:mah"
database_cross_reference "GOC:mtg_sensu"
mitochondrial tricarboxylic acid cycle enzyme complex label "obsolete mitochondrial tricarboxylic acid cycle enzyme complex"
oxoglutarate dehydrogenase complex
http://purl.obolibrary.org/obo/GO_0045252Added
succinate dehydrogenase complex (ubiquinone)
http://purl.obolibrary.org/obo/GO_0045257Added
succinate-CoA ligase complex (GDP-forming)
http://purl.obolibrary.org/obo/GO_0045244Removed
succinate-CoA ligase complex (GDP-forming) EquivalentTo mitochondrial tricarboxylic acid cycle enzyme complex and (part of some mitochondrion) and (capable of some succinate-CoA ligase (GDP-forming) activity)
succinate-CoA ligase complex (GDP-forming) SubClassOf mitochondrial tricarboxylic acid cycle enzyme complex
Added
tricarboxylic acid cycle enzyme complex
http://purl.obolibrary.org/obo/GO_0045239Removed
Added
tricarboxylic acid cycle enzyme complex label "tricarboxylic acid cycle heteromeric enzyme complex"