parent term transmembrane transport from lysosomal lumen to cytosol; … #7153
Workflow file for this run
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name: Inference diff | |
on: | |
# Triggers the workflow on pull request events for the master branch | |
pull_request: | |
branches: [ master ] | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
# A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
jobs: | |
classify_pr: | |
runs-on: ubuntu-latest | |
container: obolibrary/odkfull:${{ vars.ODK_VERSION }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Classify ontology | |
run: cd src/ontology; make -j 4 ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' reasoned.owl | |
- name: Upload PR reasoned.owl | |
uses: actions/upload-artifact@v4 | |
with: | |
name: reasoned-pr.owl | |
path: src/ontology/reasoned.owl | |
retention-days: 1 | |
classify_master: | |
runs-on: ubuntu-latest | |
container: obolibrary/odkfull:${{ vars.ODK_VERSION }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
ref: master | |
- name: Classify ontology | |
run: cd src/ontology; make -j 4 ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' reasoned.owl | |
- name: Upload master reasoned.owl | |
uses: actions/upload-artifact@v4 | |
with: | |
name: reasoned-master.owl | |
path: src/ontology/reasoned.owl | |
retention-days: 1 | |
diff_classification: | |
needs: | |
- classify_pr | |
- classify_master | |
runs-on: ubuntu-latest | |
container: obolibrary/odkfull:${{ vars.ODK_VERSION }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Download master classification | |
uses: actions/download-artifact@v4 | |
with: | |
name: reasoned-master.owl | |
path: reasoned-master.owl | |
- name: Download PR classification | |
uses: actions/download-artifact@v4 | |
with: | |
name: reasoned-pr.owl | |
path: reasoned-pr.owl | |
- name: Diff classification | |
run: export ROBOT_JAVA_ARGS=-Xmx6G; cd src/ontology; robot diff --left ../../reasoned-master.owl/reasoned.owl --left-catalog catalog-v001.xml --right ../../reasoned-pr.owl/reasoned.owl --right-catalog catalog-v001.xml -f markdown -o classification-diff.md | |
- name: Upload diff | |
uses: actions/upload-artifact@v4 | |
with: | |
name: classification-diff.md | |
path: src/ontology/classification-diff.md | |
post_comment: | |
needs: diff_classification | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Download diff | |
uses: actions/download-artifact@v4 | |
with: | |
name: classification-diff.md | |
path: classification-diff.md | |
- name: Prepare comment | |
run: "echo \"Here's a diff of how these changes impact the classified ontology: \n\" >comment.md; cat classification-diff.md/classification-diff.md >>comment.md" | |
- name: Post comment | |
uses: NejcZdovc/[email protected] | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
file: "../../comment.md" | |