Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Obsoletion notice: GO:0044237 cellular metabolic process, GO:0046950 cellular ketone body metabolic process, GO:0046379 extracellular polysaccharide metabolic process, GO:0031323 regulation of cellular metabolic process, GO:0006521 regulation of cellular amino acid metabolic process, GO:0031324 negative regulation of cellular metabolic process, GO:0031325 positive regulation of cellular metabolic process #861

Closed
edwong57 opened this issue Oct 7, 2024 · 0 comments

Comments

@edwong57
Copy link

edwong57 commented Oct 7, 2024

Dear all,

The proposal has been made to obsolete:
GO term ID and Label
GO:0044237 cellular metabolic process
GO:0046950 cellular ketone body metabolic process
GO:0046379 extracellular polysaccharide metabolic process
GO:0031323 regulation of cellular metabolic process
GO:0006521 regulation of cellular amino acid metabolic process
GO:0031324 neg regulation of cellular metabolic process
GO:0031325 pos regulation of cellular metabolic process

The reason for obsoletion is that these terms are now redundant terms to:

GO:0008152 metabolic proces
GO:1902224 ketone body metabolic process
GO:0005976 polysaccharide metabolic process
GO:0019222 regulation of metabolic process
GO:0006521 regulation of amino acid metabolic process
GO:0009892 neg reg of metabolic process
GO:0009893 pos reg of metabolic process

Related to clean up of cellular process terms - geneontology/go-ontology#28908

Annotations:
There are 63 experimental annotations to this term by (list of impacted groups and their respective numbers of EXP and ISS annotations).
1 BHF-UCL
1 SGD
1 CGD
1 PseudoCAP
1 TAIR
52 MGI
1 RGD
4 UniProt

There are 7 InterPro2GO/UniRule/UniProtKW mappings to this term.

GO:0046950 cellular ketone body metabolic process - in goslim_pir

Annotations can be viewed here: geneontology/go-annotation#5470.

These terms are being replaced with corresponding terms without 'cellular' in the name:
GO:0008152 metabolic proces
GO:1902224 ketone body metabolic process
GO:0005976 polysaccharide metabolic process
GO:0019222 regulation of metabolic process
GO:0006521 regulation of amino acid metabolic process
GO:0009892 neg reg of metabolic process
GO:0009893 pos reg of metabolic process

Any comments can be added to the issue: geneontology/go-ontology#29021.
Unless objections are received by Oct 14, 2024, we will assume that you agree to this change.

Thanks,

The GO-Ontology Editors

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant