YAML subsets not correct

[lpalbou]

I was looking at the YAML version of the subsets and except a header, they are all empty:

http://current.geneontology.org/ontology/subsets/goslim_agr.yaml

http://current.geneontology.org/ontology/subsets/goslim_aspergillus.yaml

They are referenced from the website: http://geneontology.org/docs/download-ontology/

@kltm @dougli1sqrd ?

[kltm]

No idea where those files come from. Maybe @balhoff ?

[balhoff]

No idea here either. All I can find in the ontology makefile is this: https://github.com/geneontology/go-ontology/blob/7f02b38f9c51e11a24fc04cf7d246bf9f045cb8c/src/ontology/Makefile#L240-L241

[cmungall]

The yaml files are not empty, they are doing precisely what they are intended to do which is to provide metadata abut the subset

The source is here:

https://github.com/geneontology/go-ontology/blob/master/src/ontology/subsets/goslim_agr.yaml

You will find the contents at URLs like this:

http://current.geneontology.org/ontology/subsets/goslim_agr.obo
http://current.geneontology.org/ontology/subsets/goslim_agr.json
http://current.geneontology.org/ontology/subsets/goslim_agr.owl

[cmungall]

Reopening as the action is to change the download page so it doesn't mislead

[pgaudet]

I think we should remove the yaml definitions. OK ?

[lpalbou]

Agreed, the references to yaml files should be removed as they are meta data and not the subsets themselves. Those files could be used in #102.

The PR to remove them can be approved here: #194

[lpalbou]

Just saw #193, I approved it.
Closing #194 and this ticket.