Dockerfile.alpine

FROM        alpine:edge
MAINTAINER  Denis Gebele <gebele@in-silico.ch>

RUN         apk add --update gcc vim make cmake gsl swig ruby git wget ruby-io-console ruby-dev ruby-irb ruby-json ruby-rake ruby-rdoc sudo ruby-bigdecimal fontconfig openjdk7-jre boost-dev musl-dev build-base zlib-dev libffi-dev 
RUN            gem install bundler
RUN            bundle config --global silence_root_warning 1
# cleanup
RUN         adduser -S ist
RUN         echo "ist ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers

# make service installation as user ist
#
# "switch to user ist"
USER        ist
WORKDIR     /home/ist
#ADD bashrc /home/ist/bashrc
#RUN cat bashrc >> /home/ist/.bashrc
RUN         echo 'gem: --user-install --no-document' > ~/.gemrc
ENV         PATH $PATH:/home/ist/.gem/ruby/2.4.0/bin
RUN export GEM_HOME=$(ruby -e 'print Gem.user_dir')
RUN         gem install bundler
RUN         git clone https://github.com/opentox/lazar.git 


WORKDIR     /home/ist/lazar
RUN         git checkout "feature/pure" && bundle install --path ~/.gem
WORKDIR     /home/ist

RUN         git clone https://github.com/opentox/qsar-report.git \
            && (cd qsar-report && git checkout "development" && bundle install --path ~/.gem)

RUN         git clone https://github.com/opentox/lazar-gui.git \
            && (cd lazar-gui && git checkout "development" && bundle install --path ~/.gem)

COPY start.sh /home/ist/start.sh
WORKDIR /home/ist
RUN sudo chmod +x /home/ist/start.sh
#RUN gem install bigdecimal 
#ENTRYPOINT ["/home/ist/start.sh"]
#ENTRYPOINT ["/home/ist/"]