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The QC step of the tutorial suggests to upload the html results of QUAST.
This does not work: galaxyproject/galaxy#19220 also the results are not available as data library (or I have not found it).
In my tests the QUAST step took 5 hours and failed for some of the datasets, since it downloads reference genomes from NCBI which seems to fail from time to time (as in this super old issue).
Restarting quast seems possible, but problematic for the multi-output tool, i.e. one one gets one updated output. Maybe this might work out if combined with MultiQC
Maybe replace QUAST by CheckM?
The text was updated successfully, but these errors were encountered:
The QC step of the tutorial suggests to upload the html results of QUAST.
This does not work: galaxyproject/galaxy#19220 also the results are not available as data library (or I have not found it).
In my tests the QUAST step took 5 hours and failed for some of the datasets, since it downloads reference genomes from NCBI which seems to fail from time to time (as in this super old issue).
The text was updated successfully, but these errors were encountered: