planemo test is not recursive anymore

[lcottret]

Hi,

Planemo version : 0.75.7
When I launch "planemo test" at the root of my project (where there is the 'tools') directory, it returns :
'No tests were executed - see Galaxy output for details.'
However, it worked with the version 0.75.3...

Ludo

[mvdbeek]

Can you run tree to show your working directory structure ?
I am not sure that this was ever meant to recursively run tests based on the help string:

Usage: planemo test [OPTIONS] TOOL_PATH

Run specified tool or workflow tests within Galaxy.

All referenced tools (by default all the tools in the current working
directory) will be tested and the results quickly summarized.

If I install 0.75.3 it doesn't run tests for tools in subdirectories, so I'm a little confused by the report

[lcottret]

Hi,

The directory structure is in this repo : https://forgemia.inra.fr/metexplore/met4j-galaxy .

For running my tests, I use a docker specified by this file : https://forgemia.inra.fr/metexplore/met4j-galaxy/-/blob/master/Dockerfile (https://hub.docker.com/r/metexplore/met4j-galaxy-runner).

In my CI (https://forgemia.inra.fr/metexplore/met4j-galaxy/-/blob/master/.gitlab-ci.yml), I launch planemo test and 3 months ago, it launched all the tests. See this result html file.

Indeed, I'm not sure that it's the version 0.75.3 but 3 months ago and before, the downloaded version performed tests recursively.

Maybe I missed something...

Ludo

[lcottret]

Indeed, I tested with an old version of planemo and galaxy and :

• planemo test does not work in a recursive way
• planemo test does not handle symbolic links

Well, I'm lost, I don't understand how it ever worked...