From bc94bebacf389d8129302225f146132706b755a2 Mon Sep 17 00:00:00 2001 From: CH Albach Date: Mon, 22 Feb 2016 16:33:14 -0800 Subject: [PATCH] Invert the semantics for properPlacement to improperPlacement --- src/main/resources/avro/reads.avdl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/main/resources/avro/reads.avdl b/src/main/resources/avro/reads.avdl index a514c3b8..3cd18b53 100644 --- a/src/main/resources/avro/reads.avdl +++ b/src/main/resources/avro/reads.avdl @@ -183,9 +183,9 @@ record ReadAlignment { /** The orientation and the distance between reads from the fragment are - consistent with the sequencing protocol (equivalent to SAM flag 0x2) + inconsistent with the sequencing protocol (inverse of SAM flag 0x2) */ - union { null, boolean } properPlacement = null; + union { null, boolean } improperPlacement = null; /** The fragment is a PCR or optical duplicate (SAM flag 0x400). */ union { null, boolean } duplicateFragment = null;