diff --git a/src/main/resources/avro/reads.avdl b/src/main/resources/avro/reads.avdl index a514c3b8..3cd18b53 100644 --- a/src/main/resources/avro/reads.avdl +++ b/src/main/resources/avro/reads.avdl @@ -183,9 +183,9 @@ record ReadAlignment { /** The orientation and the distance between reads from the fragment are - consistent with the sequencing protocol (equivalent to SAM flag 0x2) + inconsistent with the sequencing protocol (inverse of SAM flag 0x2) */ - union { null, boolean } properPlacement = null; + union { null, boolean } improperPlacement = null; /** The fragment is a PCR or optical duplicate (SAM flag 0x400). */ union { null, boolean } duplicateFragment = null;