CMakeLists.txt

cmake_minimum_required(VERSION 2.8)
project(SURVIVOR_ant)

set( SURVANT_VERSION_MAJOR 0 )
set( SURVANT_VERSION_MINOR 1 )
IF(CMAKE_BUILD_TYPE STREQUAL "Debug")
    message(STATUS "Building in debug mode!")
    set( SURVANT_VERSION_BUILD 0-debug )
else()
	set( SURVANT_VERSION_BUILD 0 )
ENDIF()

set(EXECUTABLE_OUTPUT_PATH ${PROJECT_SOURCE_DIR}/bin/survivor_ant-core-${SURVANT_VERSION_MAJOR}.${SURVANT_VERSION_MINOR}.${SURVANT_VERSION_BUILD}/)
file(MAKE_DIRECTORY ${EXECUTABLE_OUTPUT_PATH})

# Set a default build type for single-configuration
# CMake generators if no build type is set.
IF(NOT CMAKE_CONFIGURATION_TYPES AND NOT CMAKE_BUILD_TYPE)
	message(STATUS "No build type specified. Using 'release'")
	SET(CMAKE_BUILD_TYPE Release)
ENDIF(NOT CMAKE_CONFIGURATION_TYPES AND NOT CMAKE_BUILD_TYPE)

FIND_PACKAGE(OpenMP REQUIRED)
if(OPENMP_FOUND)
    set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
    set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
endif()


add_subdirectory(lib/zlib-1.2.7)
##add_subdirectory(lib/bamtools-2.3.0)

add_subdirectory(src)