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Package 'ideaBatch'

General Info

'ideaBatch' is an R-Package for the internal use in the IDE+A institute. It's an installation wrapper around the 'batchtools' R-package: https://github.com/mllg/batchtools

Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. Build Status AppVeyor Build Status codecov

Requirements:

  • A passwordless ssh connection to the cluster. So that you can connect via "ssh #ServerName#"
  • The devtools package has to be installed on the cluster
    • ssh #ServerName# > R > install.packages("devtools")

Installation:

require(devtools)
install_github("frehbach/ideaBatch")

Setup:

Run the init command and provide answers to the questions you are asked...

initBatchTools()

Tutorials

After the intial setup, it is recommended to take a look at some of the provided tutorials in the 'ideaBatch'-package. List them via:

ideaTutorial()

Open the tutorial explanation by specifying the tutorial index in the function call e.g.:

ideaTutorial(1)