submit

#!/bin/bash

set -e

HNAME=`hostname -f`
if [ "x$HNAME" != "xlogin03.osgconnect.net" ]; then
    echo "This workflow has to be submitted from login03.osgconnect.net"
    exit 1
fi

# needed for stashcp to be picked up the site catalog for the local site
module load stashcache

TOPDIR=`pwd`

export RUN_ID=osg-mcf10-mod-`date +'%s'`
export RUN_DIR=/local-scratch/$USER/workflows/$RUN_ID
mkdir -p $RUN_DIR

COMPUTE_SITE="osg-condorpool"
STAGING_SITE="osg-stash"

# tar up the model code
(cd Mechanistic_Pan-Cancer_Model && tar czf $RUN_DIR/Mechanistic_Pan-Cancer_Model.tar.gz .)

envsubst < "sites.xml.template" > "sites.xml"

# generate the dax
export PYTHONPATH=`pegasus-config --python`
./tools/dax-generator $RUN_ID $RUN_DIR

pegasus-plan \
    --conf pegasus.conf \
    --cluster horizontal \
    --relative-dir $RUN_ID \
    --sites $COMPUTE_SITE \
    --staging-site $STAGING_SITE \
    --output-site local \
    --dir $RUN_DIR \
    --dax dax.xml \
    --submit