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Makefile.everton
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# Makefile.in generated by automake 1.14.1 from Makefile.am.
# Makefile. Generated from Makefile.in by configure.
# Copyright (C) 1994-2013 Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.
# $Id: Makefile.am,v 1.9 2007/05/12 04:51:41 garrett Exp $
#
# AutoDock
#
# Copyright (C) 1989-2007, Garrett M. Morris, TSRI
# All Rights Reserved.
#
# AutoDock is a Trade Mark of The Scripps Research Institute.
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
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# e.g., the same source file might be shared among _SOURCES variables
# for different programs/libraries.
am__define_uniq_tagged_files = \
list='$(am__tagged_files)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | $(am__uniquify_input)`
ETAGS = etags
CTAGS = ctags
CSCOPE = cscope
AM_RECURSIVE_TARGETS = cscope
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
distdir = $(PACKAGE)-$(VERSION)
top_distdir = $(distdir)
am__remove_distdir = \
if test -d "$(distdir)"; then \
find "$(distdir)" -type d ! -perm -200 -exec chmod u+w {} ';' \
&& rm -rf "$(distdir)" \
|| { sleep 5 && rm -rf "$(distdir)"; }; \
else :; fi
am__post_remove_distdir = $(am__remove_distdir)
DIST_ARCHIVES = $(distdir).tar.gz
GZIP_ENV = --best
DIST_TARGETS = dist-gzip
distuninstallcheck_listfiles = find . -type f -print
am__distuninstallcheck_listfiles = $(distuninstallcheck_listfiles) \
| sed 's|^\./|$(prefix)/|' | grep -v '$(infodir)/dir$$'
distcleancheck_listfiles = find . -type f -print
ACLOCAL = aclocal-1.14
AMTAR = $${TAR-tar}
AM_DEFAULT_VERBOSITY = 1
AUTOCONF = autoconf
AUTOHEADER = autoheader
AUTOMAKE = automake-1.14
AWK = mawk
CC = gcc
CCDEPMODE = depmode=gcc3
CFLAGS = -g -O2
CPP = gcc -E
CPPFLAGS = -I/usr/local/cuda/include -I/common/inc -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux #-lcuda -lcudart
CUDASDK =
CUDA_CFLAGS = -I/usr/local/cuda/include -I/common/inc
CUDA_LIBS = -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux #-lcuda -lcudart
CXX = g++
CXXDEPMODE = depmode=gcc3
CXXFLAGS = -I/usr/local/cuda/include -I/common/inc -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -fopenmp #-lcuda -lcudart
CYGPATH_W = echo
DEFS = -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"[email protected]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1
DEPDIR = .deps
ECHO_C =
ECHO_N = -n
ECHO_T =
EGREP = /bin/grep -E
EXEEXT =
GREP = /bin/grep
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
LDFLAGS =
LIBOBJS =
LIBS = -lcuda -lcudart
LTLIBOBJS =
MAKEINFO = makeinfo
MKDIR_P = /bin/mkdir -p
NVCC = nvcc
NVCCFLAGS = -D_DEBUG -g -use_fast_math -I. -I/common/inc -DCUDA_READY
OBJEXT = o
PACKAGE = autodock
PACKAGE_BUGREPORT = [email protected]
PACKAGE_NAME = autodock
PACKAGE_STRING = autodock 4.0.1
PACKAGE_TARNAME = autodock
PACKAGE_URL =
PACKAGE_VERSION = 4.0.1
PATH_SEPARATOR = :
RANLIB = ranlib
SET_MAKE =
SHELL = /bin/bash
STRIP =
VERSION = 4.0.1
abs_builddir = /home/everton/workspace/autodock-cuda
abs_srcdir = /home/everton/workspace/autodock-cuda
abs_top_builddir = /home/everton/workspace/autodock-cuda
abs_top_srcdir = /home/everton/workspace/autodock-cuda
ac_ct_CC = gcc
ac_ct_CXX = g++
am__include = include
am__leading_dot = .
am__quote =
am__tar = $${TAR-tar} chof - "$$tardir"
am__untar = $${TAR-tar} xf -
bindir = ${exec_prefix}/bin
build = x86_64-unknown-linux-gnu
build_alias =
build_cpu = x86_64
build_os = linux-gnu
build_vendor = unknown
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dvidir = ${docdir}
exec_prefix = ${prefix}
host = x86_64-unknown-linux-gnu
host_alias =
host_cpu = x86_64
host_os = linux-gnu
host_vendor = unknown
htmldir = ${docdir}
includedir = ${prefix}/include
infodir = ${datarootdir}/info
install_sh = ${SHELL} /home/everton/workspace/autodock-cuda/install-sh
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
localstatedir = ${prefix}/var
mandir = ${datarootdir}/man
mkdir_p = $(MKDIR_P)
oldincludedir = /usr/include
pdfdir = ${docdir}
prefix = /usr/local
program_transform_name = s,x,x,
psdir = ${docdir}
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
#coliny.o : coliny.h
# $(CXX) $(CPPFLAGS) $(CXXFLAGS) $(ACRO_INCLUDES) -c coliny.cc -o coliny.o
# see Autoconf manual 4.7.3 (p. 25) support for VPATH
# enabling multi-platform builds
srcdir = .
sysconfdir = ${prefix}/etc
target_alias =
top_build_prefix =
top_builddir = .
top_srcdir = .
EXTRA_DIST = AD4_PARM99.dat AD4_parameters.dat paramdat2h.csh Tests
# Define the AutoDock 4 source code files:
autodock4_SOURCES = \
main.cc
noinst_LIBRARIES = libad.a
libad_a_SOURCES = analysis.cc atom_parameter_manager.cc banner.cc \
bestpdb.cc calculateEnergies.cc call_glss.cc call_gs.cc \
call_ls.cc changeState.cc check_header_float.cc \
check_header_int.cc check_header_line.cc cluster_analysis.cc \
clmode.cc cmdmode.cc cnv_state_to_coords.cc com.cc \
conformation_sampler.cc distdepdiel.cc stateLibrary.cc \
readfield.cc readmap.cc readPDBQT.cc read_parameter_library.cc \
eval.cc gencau.cc getrms.cc get_atom_type.cc \
getInitialState.cc getpdbcrds.cc gs.cc initautodock.cc \
input_state.cc investigate.cc linpack.cc ls.cc mapping.cc \
minmeanmax.cc mkNewState.cc mkTorTree.cc mkRandomState.cc \
nonbonds.cc openfile.cc output_state.cc parse_com_line.cc \
parse_dpf_line.cc parse_param_line.cc parse_PDBQT_line.cc \
parse_trj_line.cc parsetypes.cc print_2x.cc \
print_atomic_energies.cc print_avsfld.cc writePDBQT.cc \
print_rem.cc printdate.cc printEnergies.cc printhms.cc \
prClusterHist.cc prInitialState.cc prTorConList.cc \
qmultiply.cc qtransform.cc quicksort.cc ranlib.cc rep.cc \
scauchy.cc set_cmd_io_std.cc setflags.cc simanneal.cc \
sort_enrg.cc stop.cc strindex.cc success.cc summarizegrids.cc \
support.cc swap.cc timesys.cc timesyshms.cc torNorVec.cc \
torsion.cc trilinterp.cc usage.cc weedbonds.cc \
warn_bad_file.cc coliny.cc eintcal.cc eintcalPrint.cc \
intnbtable.cc nbe.cc PDBQT_tokens.h analysis.h \
atom_parameter_manager.h autocomm.h autoglobal.h banner.h \
bestpdb.h calculateEnergies.h call_glss.h call_gs.h call_ls.h \
changeState.h check_header_float.h check_header_int.h \
check_header_line.h clmode.h cluster_analysis.h cmdmode.h \
cmdtokens.h cnv_state_to_coords.h coliny.h \
conformation_sampler.h constants.h default_parameters.h \
distdepdiel.h dpftoken.h eintcal.h eintcalPrint.h energy.h \
eval.h gencau.h getInitialState.h get_atom_type.h getpdbcrds.h \
getrms.h globals.h grid.h gs.h hybrids.h initautodock.h \
input_state.h intnbtable.h investigate.h ls.h main.h mdist.h \
mkNewState.h mkRandomState.h mkTorTree.h molstruct.h nbe.h \
nonbonds.h openfile.h output_state.h parameters.h \
parse_PDBQT_line.h parse_com_line.h parse_dpf_line.h \
parse_param_line.h parse_trj_line.h parsetypes.h partokens.h \
prClusterHist.h prInitialState.h prTorConList.h \
printEnergies.h print_2x.h print_atomic_energies.h \
print_avsfld.h print_rem.h printdate.h printhms.h qmultiply.h \
qtransform.h quicksort.h ranlib.h readPDBQT.h \
read_parameter_library.h readfield.h readmap.h rep.h \
rep_constants.h set_cmd_io_std.h setflags.h simanneal.h \
sort_enrg.h stateLibrary.h stop.h strindex.h structs.h \
success.h summarizegrids.h support.h swap.h timesys.h \
timesyshms.h torNorVec.h torsion.h trilinterp.h trjtokens.h \
typedefs.h usage.h version.h warn_bad_file.h weedbonds.h \
writePDBQT.h $(am__append_1)
#AM_CXXFLAGS = -Wall -O3 # All warnings, Agressive optimization
#AM_CXXFLAGS = -Wall -O3 -ftree-vectorize # All warnings, Agressive optimization + GCC vectorization # MacOSX only?
AM_CPPFLAGS = -DNOSQRT \
-DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT \
-DWRITEPDBQSTATE \
-I$(srcdir)/../acro/include # Standard accuracy, but faster; no crossover in quaternion
#autodock4_CXXFLAGS = -Wall -O3 # All warnings, Agressive optimization
#autodock4_CXXFLAGS = -Wall -O3 -ftree-vectorize # All warnings, Agressive optimization + GCC vectorization # MacOSX only?
#autodock4_CPPFLAGS = -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT \
# -DWRITEPDBQSTATE # Standard accuracy, but faster; no crossover in quaternion
autodock4_LDADD = libad.a -lm $(am__append_2)
#autodock4_LDFLAGS = -fno-stack-limit # Cygwin, 32MB stacksize
#
# If you need to use debugging or profiling, these should also be
# modified appropriately:
# DBUG & PROF
#
# If you want to use the Coliny solver library, uncomment the following:
# COLINY = yes
#
# Abbreviations:
#
# Alpha = Compaq/Digital Equipment Corp., Alpha
# Convex = Convex, c2
# Cygwin = Cygwin running on Microsoft Windows
# Darwin = Darwin
# HP = Hewlett Packard Precision Architecture, hppa
# Linux = Any platform that runs GNU/Linux, Linux
# MacOSX = Apple Mac OS X 10.0 & higher, MacOSX
# SGI = Silicon Graphics Inc., sgi4D
# Sun = Sun Microsystems, sun4
# CFLAGS = $(CSTD) $(OPT) -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT # SGI, HP, Alpha, Sun, Convex, Cygwin, Linux, MacOSX: Standard accuracy, but faster; no crossover in quaternion
# CFLAGS = $(CSTD) $(OPT) -DUSE_8A_NBCUTOFF # SGI, HP, Alpha, Sun, Convex, Linux, MacOSX: Standard accuracy, but faster
# CFLAGS = $(CSTD) $(OPT) -DUSE_8A_NBCUTOFF -DQUATERNION_MUTATION # As above, but treat quaternion genes properly when doing mutations--note, this is slow!
# CFLAGS = $(CSTD) $(OPT) -DUSE_8A_NBCUTOFF -DUSE_DOUBLE # SGI, HP, Alpha, Sun, Convex, Linux, MacOSX: Standard accuracy, but faster; also use Double precision throughout
# CFLAGS = $(CSTD) $(OPT) # SGI, HP, Alpha, Sun, Convex, Cygwin, Linux, MacOSX
# CC = g++ # HP, Gnu, Cygwin, Linux, Darwin, MacOSX
# CC = g++-4.0 -arch i386 # MacOSX -- Cross-compiling for Intel on PowerPC
# CC = g++-3.3 -arch ppc # MacOSX -- Cross-compiling for PowerPC on Intel
# CC = CC # SGI
# CC = cxx # Alpha
# CSTD = $(DBUG) $(PROF) $(WARN) # SGI, Sun, Linux, MacOSX
# CSTD = $(DBUG) $(PROF) $(WARN) -DUSE_XCODE # Smaller memory footprint, good for Xcode
# CSTD = $(DBUG) $(PROF) $(WARN) # SGI, Sun, Linux, MacOSX
# CSTD = $(DBUG) $(PROF) $(WARN) -I/opt/sfw/include # Sun Soliaris 8
# CSTD = $(DBUG) $(PROF) $(WARN) -std # Convex
# CSTD = -std -verbose $(PROF) $(DBUG) $(WARN) # Alpha. Not sarah
# CSTD = -std arm -verbose $(PROF) $(DBUG) $(WARN) # Alpha. sarah
# CSTD = -DHPPA -D_HPUX_SOURCE -ansi $(PROF) $(DBUG) $(WARN) # HP
# OPTLEVEL = -O3 -ftree-vectorize # Agressive optimization + GCC vectorization
# OPTLEVEL = -O3 -ffast-math # Agressive optimization, for Intel Itanium, ia64Linux2
# OPTLEVEL = -O3 # Agressive optimization
# OPTLEVEL = -fast # Agressive optimization for the G5 on MacOSX
# OPTLEVEL = -O2 # High optimization
# OPTLEVEL = -O1 # Do optimizations that can be done quickly; default. Recommended for unit testing
# OPTLEVEL = -O0 # Do not optimize
# OPT_SGI_IPNUM = # Alpha, HP, Sun, Convex, SGI, Cygwin, Linux, MacOSX
# OPT_SGI_IPNUM = -Ofast=ip19 # SGI, 'uname -a' says 'IP19'
# OPT_SGI_IPNUM = -Ofast=ip21 # SGI, 'uname -a' says 'IP21'
# OPT_SGI_IPNUM = -Ofast=ip25 # SGI, 'uname -a' says 'IP25' PowerChallenge is R10000, IP25
# OPT_SGI_IPNUM = -Ofast=ip27 # SGI, 'uname -a' says 'IP27'
# OPT_SGI_IPNUM = -Ofast=ip30 # SGI, 'uname -a' says 'IP30'
# OPT_SGI_IPNUM = `uname -m | sed 's/IP/-Ofast=ip/'` # SGI, dynamic
# OPT_SGI_R000 = # Alpha, HP, Sun, Convex, SGI, Cygwin, Linux, MacOSX
# OPT_SGI_R000 = -r4000 -mips2 # SGI, 'hinv' says MIPS Processor is R4000
# OPT_SGI_R000 = -r8000 -mips4 # SGI, 'hinv' says MIPS Processor is R8000
# OPT_SGI_R000 = -r10000 -mips4 # SGI, 'hinv' says MIPS Processor is R10000
# OPT_SGI_R000 = -r12000 -mips4 # SGI, 'hinv' says MIPS Processor is R12000
# OPT_SGI_R000 = -r14000 -mips4 # SGI, 'hinv' says MIPS Processor is R14000
# OPT_SGI_R000 = `hinv | grep '^CPU:' | awk '{print $3}' | sed 's/R/-r/'` -mips4 # SGI, dynamic, -mips4 (works with -r8000 to -r14000, not -r4000)
# OPT = $(OPTLEVEL) # Alpha, HP, Sun, Convex, Cygwin, Linux, MacOSX
# OPT = $(OPTLEVEL) -ffast-math # Gnu cc, fast-math is dangerous!
# OPT = $(OPTLEVEL) -n32 $(OPT_SGI_IPNUM) $(OPT_SGI_R000) -IPA $(LNO_OPT) # SGI
# OPT = $(OPTLEVEL) -n32 $(OPT_SGI_IPNUM) $(OPT_SGI_R000) -IPA $(LNO_OPT) -DUSE_INT_AS_LONG # SGI (long is 8bytes)
# OPT = $(OPTLEVEL) $(OPT_SGI_IPNUM) $(OPT_SGI_R000) $(LNO_OPT) # SGI, not new 32-bit
# LNO_OPT = # SGI, no special optimization at link time; Sun, Cygwin, Linux, MacOSX
# LNO_OPT = -LNO:auto_dist=ON:gather_scatter=2 # SGI
# LINKOPT = $(CSTD) $(OPT) # All platforms except Cygwin and Sun
# LINKOPT = $(CSTD) $(OPT) -fno-stack-limit # Cygwin, 32MB stacksize
# LINKOPT = $(CSTD) $(OPT) -Wl,--stack=0x4000000 # Cygwin, 64MB stacksize
# LINKOPT = $(CSTD) $(OPT) -L/opt/sfw/lib # Sun
# LINK = $(LINKOPT) # Linking flags
# LINK = $(LINKOPT) -cord # Procedure rearranger on SGI
# LIB = -lm # for all platforms
# LIB = -lSaturn # for profiling using MacOSX Saturn
# DBUG = # Use assert code
# DBUG = -DNDEBUG # No debugging and no assert code
# DBUG = -g # dbx, or Gnu gdb
# DBUG = -g -DDEBUG # dbx + DEBUG-specific code
# DBUG = -g3 # dbx + optimization
# DBUG = -g3 -DDEBUG # dbx + optimization, + DEBUG-specific code
# DBUG = -DDEBUG # Just DEBUG-specific code
# DBUG = -DDEBUG2 # Just DEBUG2-specific code for tracking prop.selection
# DBUG = -DDEBUG3 # Just DEBUG3-specific code for print age of individuals
# DBUG = -g -DDEBUG -DDEBUG2 -DDEBUG3 # Debug everything
# DBUG = -DDEBUG_MUTATION # Use assert code, & print out information anywhere involving mutation
# DBUG = -g3 -DDEBUG_QUAT # Use assert code, & assert quaternions are 4D-normalised
# DBUG = -g3 -DDEBUG_QUAT -DDEBUG_QUAT_PRINT # Use assert code, & assert quaternions are 4D-normalised, and print out
# DBUG = -g3 -DDEBUG_QUAT -DDEBUG_QUAT_PRINT -DDEBUG # Use assert code, & assert quaternions are 4D-normalised, and use DEBUG-specific code, and print out
# DBUG = -g3 -DDEBUG_MUTATION # dbx + optimization; Use assert code, & print out information anywhere involving mutation
# DBUG = -g3 -DDEBUG_MUTATION -DDEBUG # dbx + optimization; Use assert code, & print out information anywhere involving mutation + all debug statements
# DBUG = -g3 -DDEBUG_MUTATION -DDEBUG -DDEBUG3 # dbx + optimization; Use assert code, & print out information anywhere involving mutation + all debug statements incl. 3
# PROF = # No profiling
# PROF = -p # CC Profiling
# PROF = -pg # For GNU gcc & GNU g++ Profiling with GNU gprof
# WARN = # Default warning level
# WARN = -woff all # For no warnings
# WARN = -Wall # All warnings, gcc -- Recommended for developers
# WARN = -fullwarn -ansiE -ansiW # For full warnings during compilation
### ifeq ($(COLINY),yes)
### ACRO_OS = -DDARWIN # Darwin, MacOSX
### # ACRO_OS = -DLINUX # Linux
###
### # ACRO_LINK = -L../acro/lib -lcoliny -lcolin -lpico -lutilib -lappspack -l3po -lg2c # Linux
### ACRO_LINK = -L../acro/lib -lcoliny -lcolin -lpico -lutilib -lappspack -l3po -L/sw/lib -lg2c # Darwin, MacOSX (Fink needed)
###
### ACRO_INCLUDES = -I../acro/include -DUSING_COLINY $(ACRO_FLAGS)
### ACRO_FLAGS = -DDEBUGGING -DUNIX -DMULTITASK -DANSI_HDRS -DANSI_NAMESPACES $(ACRO_OS)
### LIB = $(ACRO_LINK)
### ACRO = acro
### COLINYLIB = libcoliny.a # Using Coliny
### else
COLINYLIB = # Not using Coliny
all: all-am
.SUFFIXES:
.SUFFIXES: .cc .cu .o .obj
am--refresh: Makefile
@:
$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
@for dep in $?; do \
case '$(am__configure_deps)' in \
*$$dep*) \
echo ' cd $(srcdir) && $(AUTOMAKE) --gnu'; \
$(am__cd) $(srcdir) && $(AUTOMAKE) --gnu \
&& exit 0; \
exit 1;; \
esac; \
done; \
echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Makefile'; \
$(am__cd) $(top_srcdir) && \
$(AUTOMAKE) --gnu Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
@case '$?' in \
*config.status*) \
echo ' $(SHELL) ./config.status'; \
$(SHELL) ./config.status;; \
*) \
echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \
cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \
esac;
$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
$(SHELL) ./config.status --recheck
$(top_srcdir)/configure: $(am__configure_deps)
$(am__cd) $(srcdir) && $(AUTOCONF)
$(ACLOCAL_M4): $(am__aclocal_m4_deps)
$(am__cd) $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
$(am__aclocal_m4_deps):
clean-noinstLIBRARIES:
-test -z "$(noinst_LIBRARIES)" || rm -f $(noinst_LIBRARIES)
libad.a: $(libad_a_OBJECTS) $(libad_a_DEPENDENCIES) $(EXTRA_libad_a_DEPENDENCIES)
$(AM_V_at)-rm -f libad.a
$(AM_V_AR)$(libad_a_AR) libad.a $(libad_a_OBJECTS) $(libad_a_LIBADD)
$(AM_V_at)$(RANLIB) libad.a
install-binPROGRAMS: $(bin_PROGRAMS)
@$(NORMAL_INSTALL)
@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
if test -n "$$list"; then \
echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
$(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
fi; \
for p in $$list; do echo "$$p $$p"; done | \
sed 's/$(EXEEXT)$$//' | \
while read p p1; do if test -f $$p \
; then echo "$$p"; echo "$$p"; else :; fi; \
done | \
sed -e 'p;s,.*/,,;n;h' \
-e 's|.*|.|' \
-e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
sed 'N;N;N;s,\n, ,g' | \
$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
{ d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
if ($$2 == $$4) files[d] = files[d] " " $$1; \
else { print "f", $$3 "/" $$4, $$1; } } \
END { for (d in files) print "f", d, files[d] }' | \
while read type dir files; do \
if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
test -z "$$files" || { \
echo " $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
$(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
} \
; done
uninstall-binPROGRAMS:
@$(NORMAL_UNINSTALL)
@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
files=`for p in $$list; do echo "$$p"; done | \
sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
-e 's/$$/$(EXEEXT)/' \
`; \
test -n "$$list" || exit 0; \
echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
cd "$(DESTDIR)$(bindir)" && rm -f $$files
clean-binPROGRAMS:
-test -z "$(bin_PROGRAMS)" || rm -f $(bin_PROGRAMS)
#lcudart and lcuda forced at the end of string
autodock4$(EXEEXT): $(autodock4_OBJECTS) $(autodock4_DEPENDENCIES) $(EXTRA_autodock4_DEPENDENCIES)
@rm -f autodock4$(EXEEXT)
$(AM_V_CXXLD) $(autodock4_LINK) $(autodock4_LDADD) $(LIBS)
#$(AM_V_CXXLD) $(autodock4_LINK) $(autodock4_LDADD) $(autodock4_OBJECTS) $(LIBS)
mostlyclean-compile:
-rm -f *.$(OBJEXT)
distclean-compile:
-rm -f *.tab.c
include ./$(DEPDIR)/analysis.Po
include ./$(DEPDIR)/atom_parameter_manager.Po
include ./$(DEPDIR)/banner.Po
include ./$(DEPDIR)/bestpdb.Po
include ./$(DEPDIR)/calculateEnergies.Po
include ./$(DEPDIR)/call_glss.Po
include ./$(DEPDIR)/call_gs.Po
include ./$(DEPDIR)/call_ls.Po
include ./$(DEPDIR)/changeState.Po
include ./$(DEPDIR)/check_header_float.Po
include ./$(DEPDIR)/check_header_int.Po
include ./$(DEPDIR)/check_header_line.Po
include ./$(DEPDIR)/clmode.Po
include ./$(DEPDIR)/cluster_analysis.Po
include ./$(DEPDIR)/cmdmode.Po
include ./$(DEPDIR)/cnv_state_to_coords.Po
include ./$(DEPDIR)/coliny.Po
include ./$(DEPDIR)/com.Po
include ./$(DEPDIR)/conformation_sampler.Po
include ./$(DEPDIR)/distdepdiel.Po
include ./$(DEPDIR)/eMapPrepCuda.Po
include ./$(DEPDIR)/eintcal.Po
include ./$(DEPDIR)/eintcalPrint.Po
include ./$(DEPDIR)/eval.Po
include ./$(DEPDIR)/gencau.Po
include ./$(DEPDIR)/getInitialState.Po
include ./$(DEPDIR)/get_atom_type.Po
include ./$(DEPDIR)/getpdbcrds.Po
include ./$(DEPDIR)/getrms.Po
include ./$(DEPDIR)/gs.Po
include ./$(DEPDIR)/initautodock.Po
include ./$(DEPDIR)/input_state.Po
include ./$(DEPDIR)/intnbtable.Po
include ./$(DEPDIR)/investigate.Po
include ./$(DEPDIR)/linpack.Po
include ./$(DEPDIR)/ls.Po
include ./$(DEPDIR)/main.Po
include ./$(DEPDIR)/mapping.Po
include ./$(DEPDIR)/minmeanmax.Po
include ./$(DEPDIR)/mkNewState.Po
include ./$(DEPDIR)/mkRandomState.Po
include ./$(DEPDIR)/mkTorTree.Po
include ./$(DEPDIR)/nbe.Po
include ./$(DEPDIR)/nonbonds.Po
include ./$(DEPDIR)/openfile.Po
include ./$(DEPDIR)/output_state.Po
include ./$(DEPDIR)/parse_PDBQT_line.Po
include ./$(DEPDIR)/parse_com_line.Po
include ./$(DEPDIR)/parse_dpf_line.Po
include ./$(DEPDIR)/parse_param_line.Po
include ./$(DEPDIR)/parse_trj_line.Po
include ./$(DEPDIR)/parsetypes.Po
include ./$(DEPDIR)/prClusterHist.Po
include ./$(DEPDIR)/prInitialState.Po
include ./$(DEPDIR)/prTorConList.Po
include ./$(DEPDIR)/printEnergies.Po
include ./$(DEPDIR)/print_2x.Po
include ./$(DEPDIR)/print_atomic_energies.Po
include ./$(DEPDIR)/print_avsfld.Po
include ./$(DEPDIR)/print_rem.Po
include ./$(DEPDIR)/printdate.Po
include ./$(DEPDIR)/printhms.Po
include ./$(DEPDIR)/qmultiply.Po
include ./$(DEPDIR)/qtransform.Po
include ./$(DEPDIR)/quicksort.Po
include ./$(DEPDIR)/ranlib.Po
include ./$(DEPDIR)/readPDBQT.Po
include ./$(DEPDIR)/read_parameter_library.Po
include ./$(DEPDIR)/readfield.Po
include ./$(DEPDIR)/readmap.Po
include ./$(DEPDIR)/rep.Po
include ./$(DEPDIR)/scauchy.Po
include ./$(DEPDIR)/set_cmd_io_std.Po
include ./$(DEPDIR)/setflags.Po
include ./$(DEPDIR)/simanneal.Po
include ./$(DEPDIR)/sort_enrg.Po
include ./$(DEPDIR)/stateLibrary.Po
include ./$(DEPDIR)/stop.Po
include ./$(DEPDIR)/strindex.Po
include ./$(DEPDIR)/success.Po
include ./$(DEPDIR)/summarizegrids.Po
include ./$(DEPDIR)/support.Po
include ./$(DEPDIR)/swap.Po
include ./$(DEPDIR)/timesys.Po
include ./$(DEPDIR)/timesyshms.Po
include ./$(DEPDIR)/torNorVec.Po
include ./$(DEPDIR)/torsion.Po
include ./$(DEPDIR)/trilinterp.Po
include ./$(DEPDIR)/usage.Po
include ./$(DEPDIR)/warn_bad_file.Po
include ./$(DEPDIR)/weedbonds.Po
include ./$(DEPDIR)/writePDBQT.Po
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