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totalopac.c
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/* This file is part of Exo_Transmit.
Exo_Transmit is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Exo_Transmit is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Exo_Transmit. If not, see <http://www.gnu.org/licenses/>.
*/
/*----------------------- totalopac.c ----------------------------
Author: Eliza Kempton ([email protected])
------------------------------------------------------------------ */
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <math.h>
#include "include.h"
#include "constant.h"
#include "atmos.h"
#include "opac.h"
#include "nrutil.h"
#include "vars.h"
#include "prototypes.h"
/* --- Global variables ------------------------------------------ */
extern struct Opac opac;
extern struct Atmos atmos;
struct Chem chem;
struct Opac opacCH4;
struct Opac opacCO2;
struct Opac opacCO;
struct Opac opacH2O;
struct Opac opacNH3;
struct Opac opacO2;
struct Opac opacO3;
struct Opac opacC2H2;
struct Opac opacC2H4;
struct Opac opacC2H6;
struct Opac opacCrH;
struct Opac opacH2CO;
struct Opac opacH2S;
struct Opac opacHCl;
struct Opac opacHCN;
struct Opac opacHF;
struct Opac opacMgH;
struct Opac opacN2;
struct Opac opacNO;
struct Opac opacNO2;
struct Opac opacOH;
struct Opac opacOCS;
struct Opac opacPH3;
struct Opac opacSH;
struct Opac opacSiH;
struct Opac opacSiO;
struct Opac opacSO2;
struct Opac opacTiO;
struct Opac opacVO;
struct Opac opacK;
struct Opac opacNa;
struct Opac opacscat;
struct Opac opacCIA;
/* ---------------------------------------------------------------
* Computes the total opacity due to all of the atmospheric
* constituents.
* --------------------------------------------------------------- */
/* ------- begin ------------ TotalOpac.c ------------------------ */
void TotalOpac() {
double **opac_CIA_H2H2, **opac_CIA_H2He, **opac_CIA_H2H,
**opac_CIA_H2CH4, **opac_CIA_CH4Ar, **opac_CIA_CH4CH4,
**opac_CIA_CO2CO2, **opac_CIA_HeH, **opac_CIA_N2CH4,
**opac_CIA_N2H2, **opac_CIA_N2N2, **opac_CIA_O2CO2,
**opac_CIA_O2N2, **opac_CIA_O2O2;
int i, j, k;
char **fileArray = getFileArray(); //get file names
vars variables = getVars(); //get planet variables
int chemSelection[32]; //get chemistry selections
getChemSelection(chemSelection);
int NLAMBDA = variables.NLAMBDA; //rename relevant variables
int NPRESSURE = variables.NPRESSURE;
int NTEMP = variables.NTEMP;
double RAYLEIGH = variables.RAYLEIGH;
/* Molecular masses */
/* Masses sourced from http://www.webqc.org/mmcalc.php */
double m_H2 = 2.0158;
double m_H = 1.0079;
double m_He = 4.002602;
double m_H2O = 18.0152;
double m_CH4 = 16.0423;
double m_CO = 28.010;
double m_CO2 = 44.010;
double m_O = 15.9994;
double m_C = 12.0107;
double m_N = 14.0067;
double m_NH3 = 17.031;
double m_N2 = 28.0134;
double m_O2 = 31.9988;
double m_O3 = 47.9982;
double m_C2H2 = 26.0373;
double m_C2H4 = 28.0532;
double m_C2H6 = 30.0690;
double m_H2CO = 30.0260;
double m_H2S = 34.0809;
double m_HCl= 36.4609;
double m_HCN = 27.0253;
double m_HF = 20.0063;
double m_MgH = 25.3129;
double m_NO = 30.0061;
double m_NO2 = 46.0055;
double m_OCS = 60.0751;
double m_OH = 17.0073;
double m_PH3 = 33.9976;
double m_SH = 33.0729;
double m_SiH = 29.0934;
double m_SiO = 44.0849;
double m_SO2 = 64.0638;
double m_TiO = 63.8664;
double m_VO = 66.9409;
double m_Na = 22.988977;
double m_K = 39.0983;
FILE *f1;
/* Allocate Memory */
opac_CIA_H2H2 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_H2He = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_H2H = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_H2CH4 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_CH4Ar = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_CH4CH4 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_CO2CO2 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_HeH = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_N2CH4 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_N2H2 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_N2N2 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_O2CO2 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_O2N2 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
opac_CIA_O2O2 = dmatrix(0, NTEMP-1, 0, NLAMBDA-1);
/* Read Chemistry Table */
ReadChemTable();
printf("ReadChemTable done\n");
/* Allocate for total opacity */
opac.name = "Total"; //Name it Total
opac.T = dvector(0, NTEMP-1); //Declare T, P, Plog10, and kappa arrays
opac.P = dvector(0, NPRESSURE-1);
opac.Plog10 = dvector(0, NPRESSURE-1);
opac.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opac.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
//populate with zeros
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] = 0.;
/* Fill in mean molecular weight (mu) values */
chem.mu = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for (j=0; j<NPRESSURE; j++) {
for (k=0; k<NTEMP; k++) {
chem.mu[j][k] =
chem.H2[j][k]* m_H2
+ chem.H[j][k]* m_H
+ chem.He[j][k] * m_He
+ chem.H2O[j][k] * m_H2O
+ chem.C[j][k] * m_C
+ chem.CH4[j][k] * m_CH4
+ chem.CO[j][k] * m_CO
+ chem.CO2[j][k] * m_CO2
+ chem.O[j][k] * m_O
+ chem.N[j][k] * m_N
+ chem.NH3[j][k] * m_NH3
+ chem.N2[j][k] * m_N2
+ chem.O2[j][k] * m_O2
+ chem.O3[j][k] * m_O3
+ chem.C2H2[j][k] * m_C2H2
+ chem.C2H4[j][k] * m_C2H4
+ chem.C2H6[j][k] * m_C2H6
+ chem.HCN[j][k] * m_HCN
+ chem.HCl[j][k] * m_HCl
+ chem.HF[j][k] * m_HF
+ chem.H2CO[j][k] * m_H2CO
+ chem.H2S[j][k] * m_H2S
+ chem.MgH[j][k] * m_MgH
+ chem.NO2[j][k] * m_NO2
+ chem.NO[j][k] * m_NO
+ chem.OH[j][k] * m_OH
+ chem.PH3[j][k] * m_PH3
+ chem.SH[j][k] * m_SH
+ chem.SO2[j][k] * m_SO2
+ chem.SiH[j][k] * m_SiH
+ chem.SiO[j][k] * m_SiO
+ chem.TiO[j][k] * m_TiO
+ chem.VO[j][k] * m_VO
+ chem.OCS[j][k] * m_OCS
+ chem.Na[j][k] * m_Na
+ chem.K[j][k] * m_K;
}
}
/* Fill in CH4 opacities */
if(chemSelection[0] == 1){ //If CH4 is selected
opacCH4.name = "CH4"; //Name it CH4
opacCH4.T = dvector(0, NTEMP-1); //Declare T, P, Plog10, and kappa arrays
opacCH4.P = dvector(0, NPRESSURE-1);
opacCH4.Plog10 = dvector(0, NPRESSURE-1);
opacCH4.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
/* Declare abundance */
opacCH4.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
/* Fill with chemistry abundance */
opacCH4.abundance[j][k] = chem.CH4[j][k];
}
}
ReadOpacTable(opacCH4, fileArray[3]); //Read opacity table for CH4
/* Populate opac.kappa */
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
/* Add to overall opac.kappa */
opac.kappa[i][j][k] += opacCH4.kappa[i][j][k];
printf("Read CH4 Opacity done\n"); //Confirmation message
FreeOpacTable(opacCH4); //Free CH4 opacity table
}
//This procedure repeats for all gases!!
/* Fill in CO2 opacities */
if(chemSelection[1] == 1){
opacCO2.name = "CO2";
opacCO2.T = dvector(0, NTEMP-1);
opacCO2.P = dvector(0, NPRESSURE-1);
opacCO2.Plog10 = dvector(0, NPRESSURE-1);
opacCO2.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacCO2.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacCO2.abundance[j][k] = chem.CO2[j][k];
}
}
ReadOpacTable(opacCO2, fileArray[8]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacCO2.kappa[i][j][k];
printf("Read CO2 Opacity done\n");
FreeOpacTable(opacCO2);
}
/* Fill in CO opacities */
if(chemSelection[2] == 1){
opacCO.name = "CO";
opacCO.T = dvector(0, NTEMP-1);
opacCO.P = dvector(0, NPRESSURE-1);
opacCO.Plog10 = dvector(0, NPRESSURE-1);
opacCO.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacCO.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacCO.abundance[j][k] = chem.CO[j][k];
}
}
ReadOpacTable(opacCO, fileArray[7]);
//Populate opac.kappa
for(i=0; i<NLAMBDA; i++)
for(j=0; j<NPRESSURE; j++)
for(k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacCO.kappa[i][j][k];
printf("Read CO Opacity done\n");
FreeOpacTable(opacCO);
}
/* Fill in H2O opacities */
if(chemSelection[3] == 1){
opacH2O.name = "H2O";
opacH2O.T = dvector(0, NTEMP-1);
opacH2O.P = dvector(0, NPRESSURE-1);
opacH2O.Plog10 = dvector(0, NPRESSURE-1);
opacH2O.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacH2O.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacH2O.abundance[j][k] = chem.H2O[j][k];
}
}
ReadOpacTable(opacH2O, fileArray[10]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacH2O.kappa[i][j][k];
printf("Read H2O Opacity done\n");
FreeOpacTable(opacH2O);
}
/* Fill in NH3 opacities */
if(chemSelection[4] == 1){
opacNH3.name = "NH3";
opacNH3.T = dvector(0, NTEMP-1);
opacNH3.P = dvector(0, NPRESSURE-1);
opacNH3.Plog10 = dvector(0, NPRESSURE-1);
opacNH3.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacNH3.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacNH3.abundance[j][k] = chem.NH3[j][k];
}
}
ReadOpacTable(opacNH3, fileArray[17]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacNH3.kappa[i][j][k];
printf("Read NH3 Opacity done\n");
FreeOpacTable(opacNH3);
}
/* Fill in O2 opacities */
if(chemSelection[5] == 1){
opacO2.name = "O2";
opacO2.T = dvector(0, NTEMP-1);
opacO2.P = dvector(0, NPRESSURE-1);
opacO2.Plog10 = dvector(0, NPRESSURE-1);
opacO2.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacO2.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacO2.abundance[j][k] = chem.O2[j][k];
}
}
ReadOpacTable(opacO2, fileArray[20]);
//Populate opac.kappa
for(i=0; i<NLAMBDA; i++)
for(j=0; j<NPRESSURE; j++)
for(k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacO2.kappa[i][j][k];
printf("Read O2 Opacity done\n");
FreeOpacTable(opacO2);
}
/* Fill in O3 opacities */
if(chemSelection[6] == 1){
opacO3.name = "O3";
opacO3.T = dvector(0, NTEMP-1);
opacO3.P = dvector(0, NPRESSURE-1);
opacO3.Plog10 = dvector(0, NPRESSURE-1);
opacO3.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacO3.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacO3.abundance[j][k] = chem.O3[j][k];
}
}
ReadOpacTable(opacO3, fileArray[21]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacO3.kappa[i][j][k];
printf("Read O3 Opacity done\n");
FreeOpacTable(opacO3);
}
/* Fill in C2H2 opacities */
if(chemSelection[7] == 1){
opacC2H2.name = "C2H2";
opacC2H2.T = dvector(0, NTEMP-1);
opacC2H2.P = dvector(0, NPRESSURE-1);
opacC2H2.Plog10 = dvector(0, NPRESSURE-1);
opacC2H2.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacC2H2.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacC2H2.abundance[j][k] = chem.C2H2[j][k];
}
}
ReadOpacTable(opacC2H2, fileArray[4]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacC2H2.kappa[i][j][k];
printf("Read C2H2 Opacity done\n");
FreeOpacTable(opacC2H2);
}
/* Fill in C2H4 opacities */
if(chemSelection[8] == 1){
opacC2H4.name = "C2H4";
opacC2H4.T = dvector(0, NTEMP-1);
opacC2H4.P = dvector(0, NPRESSURE-1);
opacC2H4.Plog10 = dvector(0, NPRESSURE-1);
opacC2H4.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacC2H4.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacC2H4.abundance[j][k] = chem.C2H4[j][k];
}
}
ReadOpacTable(opacC2H4, fileArray[5]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacC2H4.kappa[i][j][k];
printf("Read C2H4 Opacity done\n");
FreeOpacTable(opacC2H4);
}
/* Fill in C2H6 opacities */
if(chemSelection[9] == 1){
opacC2H6.name = "C2H6";
opacC2H6.T = dvector(0, NTEMP-1);
opacC2H6.P = dvector(0, NPRESSURE-1);
opacC2H6.Plog10 = dvector(0, NPRESSURE-1);
opacC2H6.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacC2H6.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacC2H6.abundance[j][k] = chem.C2H6[j][k];
}
}
ReadOpacTable(opacC2H6, fileArray[6]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacC2H6.kappa[i][j][k];
printf("Read C2H6 Opacity done\n");
FreeOpacTable(opacC2H6);
}
/* Fill in H2CO opacities */
if(chemSelection[10] == 1){
opacH2CO.name = "H2CO";
opacH2CO.T = dvector(0, NTEMP-1);
opacH2CO.P = dvector(0, NPRESSURE-1);
opacH2CO.Plog10 = dvector(0, NPRESSURE-1);
opacH2CO.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacH2CO.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacH2CO.abundance[j][k] = chem.H2CO[j][k];
}
}
ReadOpacTable(opacH2CO, fileArray[9]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacH2CO.kappa[i][j][k];
printf("Read H2CO Opacity done\n");
FreeOpacTable(opacH2CO);
}
/* Fill in H2S opacities */
if(chemSelection[11] == 1){
opacH2S.name = "H2S";
opacH2S.T = dvector(0, NTEMP-1);
opacH2S.P = dvector(0, NPRESSURE-1);
opacH2S.Plog10 = dvector(0, NPRESSURE-1);
opacH2S.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacH2S.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacH2S.abundance[j][k] = chem.H2S[j][k];
}
}
ReadOpacTable(opacH2S, fileArray[11]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacH2S.kappa[i][j][k];
printf("Read H2S Opacity done\n");
FreeOpacTable(opacH2S);
}
/* Fill in HCl opacities */
if(chemSelection[12] == 1){
opacHCl.name = "HCl";
opacHCl.T = dvector(0, NTEMP-1);
opacHCl.P = dvector(0, NPRESSURE-1);
opacHCl.Plog10 = dvector(0, NPRESSURE-1);
opacHCl.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacHCl.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacHCl.abundance[j][k] = chem.HCl[j][k];
}
}
ReadOpacTable(opacHCl, fileArray[13]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacHCl.kappa[i][j][k];
printf("Read HCl Opacity done\n");
FreeOpacTable(opacHCl);
}
/* Fill in HCN opacities */
if(chemSelection[13] == 1){
opacHCN.name = "HCN";
opacHCN.T = dvector(0, NTEMP-1);
opacHCN.P = dvector(0, NPRESSURE-1);
opacHCN.Plog10 = dvector(0, NPRESSURE-1);
opacHCN.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacHCN.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacHCN.abundance[j][k] = chem.HCN[j][k];
}
}
ReadOpacTable(opacHCN, fileArray[12]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacHCN.kappa[i][j][k];
printf("Read HCN Opacity done\n");
FreeOpacTable(opacHCN);
}
/* Fill in HF opacities */
if(chemSelection[14] == 1){
opacHF.name = "HF";
opacHF.T = dvector(0, NTEMP-1);
opacHF.P = dvector(0, NPRESSURE-1);
opacHF.Plog10 = dvector(0, NPRESSURE-1);
opacHF.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacHF.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacHF.abundance[j][k] = chem.HF[j][k];
}
}
ReadOpacTable(opacHF, fileArray[14]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacHF.kappa[i][j][k];
printf("Read HF Opacity done\n");
FreeOpacTable(opacHF);
}
/* Fill in MgH opacities */
if(chemSelection[15] == 1){
opacMgH.name = "MgH";
opacMgH.T = dvector(0, NTEMP-1);
opacMgH.P = dvector(0, NPRESSURE-1);
opacMgH.Plog10 = dvector(0, NPRESSURE-1);
opacMgH.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacMgH.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacMgH.abundance[j][k] = chem.MgH[j][k];
}
}
ReadOpacTable(opacMgH, fileArray[15]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacMgH.kappa[i][j][k];
printf("Read MgH Opacity done\n");
FreeOpacTable(opacMgH);
}
/* Fill in N2 opacities */
if(chemSelection[16] == 1){
opacN2.name = "N2";
opacN2.T = dvector(0, NTEMP-1);
opacN2.P = dvector(0, NPRESSURE-1);
opacN2.Plog10 = dvector(0, NPRESSURE-1);
opacN2.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacN2.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacN2.abundance[j][k] = chem.N2[j][k];
}
}
ReadOpacTable(opacN2, fileArray[16]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacN2.kappa[i][j][k];
printf("Read N2 Opacity done\n");
FreeOpacTable(opacN2);
}
/* Fill in NO opacities */
if(chemSelection[17] == 1){
opacNO.name = "NO";
opacNO.T = dvector(0, NTEMP-1);
opacNO.P = dvector(0, NPRESSURE-1);
opacNO.Plog10 = dvector(0, NPRESSURE-1);
opacNO.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacNO.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacNO.abundance[j][k] = chem.NO[j][k];
}
}
ReadOpacTable(opacNO, fileArray[18]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacNO.kappa[i][j][k];
printf("Read NO Opacity done\n");
FreeOpacTable(opacNO);
}
/* Fill in NO2 opacities */
if(chemSelection[18] == 1){
opacNO2.name = "NO2";
opacNO2.T = dvector(0, NTEMP-1);
opacNO2.P = dvector(0, NPRESSURE-1);
opacNO2.Plog10 = dvector(0, NPRESSURE-1);
opacNO2.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacNO2.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacNO2.abundance[j][k] = chem.NO2[j][k];
}
}
ReadOpacTable(opacNO2, fileArray[19]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacNO2.kappa[i][j][k];
printf("Read NO2 Opacity done\n");
FreeOpacTable(opacNO2);
}
/* Fill in OCS opacities */
if(chemSelection[19] == 1){
opacOCS.name = "OCS";
opacOCS.T = dvector(0, NTEMP-1);
opacOCS.P = dvector(0, NPRESSURE-1);
opacOCS.Plog10 = dvector(0, NPRESSURE-1);
opacOCS.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacOCS.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacOCS.abundance[j][k] = chem.OCS[j][k];
}
}
ReadOpacTable(opacOCS, fileArray[22]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacOCS.kappa[i][j][k];
printf("Read OCS Opacity done\n");
FreeOpacTable(opacOCS);
}
/* Fill in OH opacities */
if(chemSelection[20] == 1){
opacOH.name = "OH";
opacOH.T = dvector(0, NTEMP-1);
opacOH.P = dvector(0, NPRESSURE-1);
opacOH.Plog10 = dvector(0, NPRESSURE-1);
opacOH.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacOH.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacOH.abundance[j][k] = chem.OH[j][k];
}
}
ReadOpacTable(opacOH, fileArray[23]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacOH.kappa[i][j][k];
printf("Read OH Opacity done\n");
FreeOpacTable(opacOH);
}
/* Fill in PH3 opacities */
if(chemSelection[21] == 1){
opacPH3.name = "PH3";
opacPH3.T = dvector(0, NTEMP-1);
opacPH3.P = dvector(0, NPRESSURE-1);
opacPH3.Plog10 = dvector(0, NPRESSURE-1);
opacPH3.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacPH3.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacPH3.abundance[j][k] = chem.PH3[j][k];
}
}
ReadOpacTable(opacPH3, fileArray[24]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacPH3.kappa[i][j][k];
printf("Read PH3 Opacity done\n");
FreeOpacTable(opacPH3);
}
/* Fill in SH opacities */
if(chemSelection[22] == 1){
opacSH.name = "SH";
opacSH.T = dvector(0, NTEMP-1);
opacSH.P = dvector(0, NPRESSURE-1);
opacSH.Plog10 = dvector(0, NPRESSURE-1);
opacSH.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacSH.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacSH.abundance[j][k] = chem.SH[j][k];
}
}
ReadOpacTable(opacSH, fileArray[25]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacSH.kappa[i][j][k];
printf("Read SH Opacity done\n");
FreeOpacTable(opacSH);
}
/* Fill in SiH opacities */
if(chemSelection[23] == 1){
opacSiH.name = "SiH";
opacSiH.T = dvector(0, NTEMP-1);
opacSiH.P = dvector(0, NPRESSURE-1);
opacSiH.Plog10 = dvector(0, NPRESSURE-1);
opacSiH.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacSiH.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacSiH.abundance[j][k] = chem.SiH[j][k];
}
}
ReadOpacTable(opacSiH, fileArray[27]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacSiH.kappa[i][j][k];
printf("Read SiH Opacity done\n");
FreeOpacTable(opacSiH);
}
/* Fill in SiO opacities */
if(chemSelection[24] == 1){
opacSiO.name = "SiO";
opacSiO.T = dvector(0, NTEMP-1);
opacSiO.P = dvector(0, NPRESSURE-1);
opacSiO.Plog10 = dvector(0, NPRESSURE-1);
opacSiO.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacSiO.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacSiO.abundance[j][k] = chem.SiO[j][k];
}
}
ReadOpacTable(opacSiO, fileArray[28]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacSiO.kappa[i][j][k];
printf("Read SiO Opacity done\n");
FreeOpacTable(opacSiO);
}
/* Fill in SO2 opacities */
if(chemSelection[25] == 1){
opacSO2.name = "SO2";
opacSO2.T = dvector(0, NTEMP-1);
opacSO2.P = dvector(0, NPRESSURE-1);
opacSO2.Plog10 = dvector(0, NPRESSURE-1);
opacSO2.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacSO2.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacSO2.abundance[j][k] = chem.SO2[j][k];
}
}
ReadOpacTable(opacSO2, fileArray[26]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacSO2.kappa[i][j][k];
printf("Read SO2 Opacity done\n");
FreeOpacTable(opacSO2);
}
/* Fill in TiO opacities */
if(chemSelection[26] == 1){
opacTiO.name = "TiO";
opacTiO.T = dvector(0, NTEMP-1);
opacTiO.P = dvector(0, NPRESSURE-1);
opacTiO.Plog10 = dvector(0, NPRESSURE-1);
opacTiO.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacTiO.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacTiO.abundance[j][k] = chem.TiO[j][k];
}
}
ReadOpacTable(opacTiO, fileArray[29]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacTiO.kappa[i][j][k];
printf("Read TiO Opacity done\n");
FreeOpacTable(opacTiO);
}
/* Fill in VO opacities */
if(chemSelection[27] == 1){
opacVO.name = "VO";
opacVO.T = dvector(0, NTEMP-1);
opacVO.P = dvector(0, NPRESSURE-1);
opacVO.Plog10 = dvector(0, NPRESSURE-1);
opacVO.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacVO.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacVO.abundance[j][k] = chem.VO[j][k];
}
}
ReadOpacTable(opacVO, fileArray[30]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacVO.kappa[i][j][k];
printf("Read VO Opacity done\n");
FreeOpacTable(opacVO);
}
/* Atomic opacities */
/* Fill in Na opacities */
if(chemSelection[28] == 1){
opacNa.name = "Na";
opacNa.T = dvector(0, NTEMP-1);
opacNa.P = dvector(0, NPRESSURE-1);
opacNa.Plog10 = dvector(0, NPRESSURE-1);
opacNa.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacNa.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){
for(k=0; k<NTEMP; k++){
opacNa.abundance[j][k] = chem.Na[j][k];
}
}
ReadOpacTable(opacNa, fileArray[31]);
//Populate opac.kappa
for (i=0; i<NLAMBDA; i++)
for (j=0; j<NPRESSURE; j++)
for (k=0; k<NTEMP; k++)
opac.kappa[i][j][k] += opacNa.kappa[i][j][k];
printf("Read Na Opacity done\n");
FreeOpacTable(opacNa);
}
/* Fill in K opacities */
if(chemSelection[29] == 1){
opacK.name = "K";
opacK.T = dvector(0, NTEMP-1);
opacK.P = dvector(0, NPRESSURE-1);
opacK.Plog10 = dvector(0, NPRESSURE-1);
opacK.kappa = d3tensor(0, NLAMBDA-1, 0, NPRESSURE-1, 0, NTEMP-1);
opacK.abundance = dmatrix(0, NPRESSURE-1, 0, NTEMP-1);
for(j=0; j<NPRESSURE; j++){