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convert_oddsratio_to_riskratio() / convert_oddsratio_to_riskdiff() and vice versa #568

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bwiernik opened this issue Mar 6, 2023 · 7 comments · May be fixed by #575
Open

convert_oddsratio_to_riskratio() / convert_oddsratio_to_riskdiff() and vice versa #568

bwiernik opened this issue Mar 6, 2023 · 7 comments · May be fixed by #575

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@bwiernik
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bwiernik commented Mar 6, 2023 •
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convert_oddsratio_to_odds <- function(OR, log = FALSE, base_rate = NULL, base_odds = NULL) {
  if (is.null(base_odds)) {
    if (is.null(base_rate)) {
      insight::format_error("Either `base_rate` or `base_odds` must be supplied.")
    }
    base_odds <- convert_probs_to_odds(base_rate, log = log)
  }
  compare_odds <- ifelse(isTRUE(log), OR + base_odds, OR * base_odds)
  return(compare_odds)
}

convert_oddsratio_to_probs <- function(OR, log = FALSE, base_rate = NULL, base_odds = NULL) {
  compare_odds <- convert_oddsratio_to_odds(OR = OR, log = log, base_rate = base_rate, base_odds = base_odds)
  compare_rate <- convert_odds_to_probs(compare_odds, log = log)
  return(compare_rate)
}

convert_oddsratio_to_riskratio <- function(OR, log = FALSE, base_rate = NULL, base_odds = NULL) {
  compare_rate <- convert_oddsratio_to_probs(OR = OR, log = log, base_rate = base_rate, base_odds = base_odds)
  if (is.null(base_rate)) {
    base_rate <- convert_odds_to_probs(base_odds, log = log)
  }
  riskratio <- compare_rate / base_rate
}

convert_oddsratio_to_riskdiff <- function(OR, log = FALSE, base_rate = NULL, base_odds = NULL) {
  compare_rate <- convert_oddsratio_to_probs(OR = OR, log = log, base_rate = base_rate, base_odds = base_odds)
  if (is.null(base_rate)) {
    base_rate <- convert_odds_to_probs(base_odds, log = log)
  }
  riskratio <- compare_rate - base_rate
}
@bwiernik bwiernik changed the title convert_oddsratio_to_riskratio() / convert_oddsratio_to_riskdifference() and vice versa convert_oddsratio_to_riskratio() / convert_oddsratio_to_riskdiff() and vice versa Mar 6, 2023
@mattansb
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mattansb commented Mar 6, 2023

We have the OR to RR one here https://easystats.github.io/effectsize/reference/oddsratio_to_riskratio.html

Should we have all possible pairings?

@bwiernik
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bwiernik commented Mar 6, 2023

Oh, then I guess the issue is that some of our functions start with convert and some don't. That's confusing and we should consider standardizing

@mattansb
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mattansb commented Mar 6, 2023

I think the verbosity can be reduced (:

@strengejacke
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Do any functions start with convert_*?

@strengejacke
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Just saw, that seem to be aliases, right? Maybe we can deprecate those?

@strengejacke
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But for convenience reasons, we could probably add those conversion functions, too? And also add log-odds functions that call the oddsratio-functions with log = TRUE? Some colleagues were using the effectsize package and "complaining" that you can only convert to/from odds ratio, but not log-odds. They missed the log argument, which also isn't clearly documented (people need "keywords" like "log-odds" or similar).

@strengejacke strengejacke mentioned this issue Mar 6, 2023
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@mattansb
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mattansb commented Mar 9, 2023 •
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Okay, so I think we need two sets of functions:

1. Between prob-change metrics

  • OR to RR (oddsratio_to_riskratio)
  • OR to ARR (oddsratio_to_arr)
  • OR to NNT
  • logOR to RR
  • logOR to ARR
  • logOR to NNT
  • RR to OR (riskratio_to_oddsratio)
  • RR to logOR
  • RR to ARR (riskratio_to_arr)
  • RR to NNT
  • ARR to OR (arr_to_oddsratio)
  • ARR to logOR
  • ARR to RR (arr_to_riskratio)
  • ARR to NNT (arr_to_nnt)
  • NNT to OR
  • NNT to logOR
  • NNT to RR
  • NNT to ARR (nnt_to_arr)

Do we need??

  • OR to logOR
  • logOR to OR

2. Change to Probs

  • OR to prob
  • logOR to prob
  • RR to prob
  • ARR to prob
  • NNT to prob

@strengejacke @bwiernik

  • Do we also want the inverse of these? (e.g., prob to OR)
  • Do we also want conversion to odds? (e.g., NNT to odds)

Also

@strengejacke started on some of these in #569

@mattansb mattansb linked a pull request Mar 10, 2023 that will close this issue
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NEW prob change to prob functions easystats/effectsize
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@bwiernik @strengejacke @mattansb