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doc/configuring.md

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[toc]
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Note: using local genome collections currently requires [genome-grist#130](https://github.com/dib-lab/genome-grist/pull/130).
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## Overview
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genome-grist does the following:
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### Step 0: Install genome-grist and set up your directory
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<!-- EITHER follow the installation instructions (@@) -->
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For now, do this in the genome-grist development directory. Clone the genome-grist repo, create the grist environment with conda, and then:
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Switch to the appropriate branch:
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```
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git switch allow/private
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git pull
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```
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Follow the installation instructions for genome-grist and make sure
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you're in a conda environment where genome-grist is installed.
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and make sure you've installed things appropriately:
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```
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pip install -e .
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```
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you may also need sourmash...
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You will also need sourmash...
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```
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pip install sourmash
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```
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Now you should be good to go!
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and now you should be good to go!
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### Step 1: Download and unpack the `podar` reference genomes
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