From a2c477b91799545f5548d502760d638086ab38f4 Mon Sep 17 00:00:00 2001 From: Jose Hernandez <98195541+hernandezj1@users.noreply.github.com> Date: Thu, 8 Feb 2024 10:05:13 -0500 Subject: [PATCH] Update repro_research.md changing link formats --- content/lessons/repro_research.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/content/lessons/repro_research.md b/content/lessons/repro_research.md index 6c4dff7..967c9f6 100644 --- a/content/lessons/repro_research.md +++ b/content/lessons/repro_research.md @@ -69,7 +69,7 @@ When creating a digital project it is important to know what underlying software But this can be a very time-consuming task especially when it is not built into the workflows that we may already use in our day-to-day practices. For this very reason, we can utilize containers that exist to help you standardize and be able to distribute your environments. ##### Lesson - Containers -[Code refinery container Lesson](https://coderefinery.github.io/reproducible-research/environments/) +[_Code refinery container Lesson_](https://coderefinery.github.io/reproducible-research/environments/) But it is not enough to just utilize already tested environments or possibly package our own. We need to also track our __dependencies__ as they get __increasingly__ complicated as this next picture illustrates perfectly. @@ -80,18 +80,18 @@ But it is not enough to just utilize already tested environments or possibly pac For example, if you are using the package _scipy_ you need to have _python_ and _pip_ on your environment already. In this case, _python_ and _pip_ are your __dependencies__. To track these dependencies we can utilize package managers which organize the environments and track the dependencies for us. ##### Lesson - Dependencies -_Code Refinery dependency lesson_ +[_Code Refinery dependency lesson_]("https://coderefinery.github.io/reproducible-research/dependencies/) ##### Additional resources - Common container software intro lessons and/or docs: - Docker - - Carpentries lesson - - Matthew Feickert Lesson - - Official Intro Docs + - [Carpentries lesson](https://carpentries-incubator.github.io/docker-introduction/) + - [Matthew Feickert Lesson](https://matthewfeickert.github.io/intro-to-docker/) + - [Official Intro Docs](https://docs.docker.com/get-started/) - Singularity (very useful for High-performance Computing work) - - Carpentries lesson - - Singularity Intro Docs + - [Carpentries lesson](https://carpentries-incubator.github.io/singularity-introduction/") + - [Singularity Intro Docs](https://carpentries-incubator.github.io/singularity-introduction/) - Common dependency managers intro lessons and/or docs: