From a2c477b91799545f5548d502760d638086ab38f4 Mon Sep 17 00:00:00 2001
From: Jose Hernandez <98195541+hernandezj1@users.noreply.github.com>
Date: Thu, 8 Feb 2024 10:05:13 -0500
Subject: [PATCH] Update repro_research.md
changing link formats
---
content/lessons/repro_research.md | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
diff --git a/content/lessons/repro_research.md b/content/lessons/repro_research.md
index 6c4dff7..967c9f6 100644
--- a/content/lessons/repro_research.md
+++ b/content/lessons/repro_research.md
@@ -69,7 +69,7 @@ When creating a digital project it is important to know what underlying software
But this can be a very time-consuming task especially when it is not built into the workflows that we may already use in our day-to-day practices. For this very reason, we can utilize containers that exist to help you standardize and be able to distribute your environments.
##### Lesson - Containers
-[Code refinery container Lesson](https://coderefinery.github.io/reproducible-research/environments/)
+[_Code refinery container Lesson_](https://coderefinery.github.io/reproducible-research/environments/)
But it is not enough to just utilize already tested environments or possibly package our own. We need to also track our __dependencies__ as they get __increasingly__ complicated as this next picture illustrates perfectly.
@@ -80,18 +80,18 @@ But it is not enough to just utilize already tested environments or possibly pac
For example, if you are using the package _scipy_ you need to have _python_ and _pip_ on your environment already. In this case, _python_ and _pip_ are your __dependencies__. To track these dependencies we can utilize package managers which organize the environments and track the dependencies for us.
##### Lesson - Dependencies
-_Code Refinery dependency lesson_
+[_Code Refinery dependency lesson_]("https://coderefinery.github.io/reproducible-research/dependencies/)
##### Additional resources
- Common container software intro lessons and/or docs:
- Docker
- - Carpentries lesson
- - Matthew Feickert Lesson
- - Official Intro Docs
+ - [Carpentries lesson](https://carpentries-incubator.github.io/docker-introduction/)
+ - [Matthew Feickert Lesson](https://matthewfeickert.github.io/intro-to-docker/)
+ - [Official Intro Docs](https://docs.docker.com/get-started/)
- Singularity (very useful for High-performance Computing work)
- - Carpentries lesson
- - Singularity Intro Docs
+ - [Carpentries lesson](https://carpentries-incubator.github.io/singularity-introduction/")
+ - [Singularity Intro Docs](https://carpentries-incubator.github.io/singularity-introduction/)
- Common dependency managers intro lessons and/or docs: