.gitignore

venv/*
github_token
bench.pid
*.csv

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a Python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
/coverage

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# System files
.DS_Store
Thumbs.db

# temporary directories
/tmp
notebooks/**/tmp/
/out-tsc

# caches and locks
/.sass-cache
/connect.lock
/typings

# logs
/libpeerconnection.log
npm-debug.log
yarn-error.log
testem.log

# node artifacts
node_modules

# nx artifacts
project.json.bak

# IDEs and editors
/.idea
.project
.classpath
.c9/
*.launch
.settings/
*.sublime-workspace
.vscode/*
!.vscode/settings.json
!.vscode/tasks.json
!.vscode/launch.json
!.vscode/extensions.json

# Files for docker image building
*.tar.gz

# nextflow and nf-test
.git
work
.nextflow*
.nf-test*
git push -u origin main

# Windows Subsystem for Linux (WSL) files
*:Zone.Identifier

# dependencies graph
bench-software-blueprints/dependencies.svg
dependencies.svg

# temporary files
libs/
tmp/
**/docs/bench-software-blueprint-*/*.yml
**/docs/coverage.txt
notebooks/**/tmp*

# do-catalog configuration
.do-catalog.yml
.do-catalog.yml.save