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general_ontofox.txt
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[URI of the OWL(RDF/XML) output file]
http://purl.obolibrary.org/obo/ro_example/imports/general_import.owl
[Source ontology]
BFO
[Low level source term URIs]
http://purl.obolibrary.org/obo/BFO_0000001
includeAllChildren
[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/BFO_0000001
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxiomsRecursively
###########################################
[Source ontology]
OBI
[Low level source term URIs]
http://purl.obolibrary.org/obo/OBI_0000070 # Assay
# insulin concentration measurement assay
# insulin concentration measurement data item
http://purl.obolibrary.org/obo/IAO_0000136 # is about
http://purl.obolibrary.org/obo/OBI_0000295 # is specified input of
http://purl.obolibrary.org/obo/OBI_0000312 # is specified output of
[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/BFO_0000001
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxiomsRecursively
###########################################
[Source ontology]
PATO
[Low level source term URIs]
http://purl.obolibrary.org/obo/PATO_0001334 # diameter
[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/PATO_0000001
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxioms
###########################################
[Source ontology]
CHEBI
[Low level source term URIs]
http://purl.obolibrary.org/obo/CHEBI_145810 #insulin
[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/CHEBI_24431
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxioms
#includeAllAxiomsRecursively #### SUPER SLOW WITH THIS IN PROTEGE?
###########################################
[Source ontology]
UBERON
[Low level source term URIs]
http://purl.obolibrary.org/obo/UBERON_0001981 # blood vessel
http://purl.obolibrary.org/obo/UBERON_0000178 # blood
[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/UBERON_0001062 # anatomical entity
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxioms
###########################################
[Source ontology]
OBA
[Low level source term URIs]
http://purl.obolibrary.org/obo/OBA_0000183 # blood vessel diameter
[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/PATO_0000001 # Quality
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxioms
###########################################
[Source ontology]
GO
[Low level source term URIs]
http://purl.obolibrary.org/obo/GO_0038023 # signaling receptor activity
#http://purl.obolibrary.org/obo/GO_0004872 # Receptor activity
http://purl.obolibrary.org/obo/GO_0016301 # Kinase activity
http://purl.obolibrary.org/obo/GO_0042310 # Vasoconstriction
[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/GO_0003674 # molecular function
http://purl.obolibrary.org/obo/GO_0008150 # biological process
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxioms
###########################################
[Source ontology]
MONDO
[Low level source term URIs]
http://purl.obolibrary.org/obo/MONDO_0005266 # diabetic retinopathy
[Top level source term URIs and target direct superclass URIs]
owl:Thing
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxioms
###########################################
[Source ontology]
HP
[Low level source term URIs]
http://purl.obolibrary.org/obo/HP_0005308 # Pulmonary artery vasoconstriction
[Top level source term URIs and target direct superclass URIs]
owl:Thing
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
#includeAllAxiomsRecursively ###### THIS CREATES A PROBLEM - JAVA STACK ERROR
includeAllAxioms
###########################################
[Source ontology]
RO
[Low level source term URIs]
http://purl.obolibrary.org/obo/RO_0001025 #located in
http://purl.obolibrary.org/obo/RO_0002211 #regulates
http://purl.obolibrary.org/obo/RO_0002200 #has phenotype
http://purl.obolibrary.org/obo/BFO_0000050 #part of
http://purl.obolibrary.org/obo/RO_0002233 #has input
http://purl.obolibrary.org/obo/RO_0002411 #causally upstream of
# http://purl.obolibrary.org/obo/RO_0000052 #inheres in
http://purl.obolibrary.org/obo/RO_0000080 #quality of
[Top level source term URIs and target direct superclass URIs]
[Source term retrieval setting]
includeAllIntermediates
[Source annotation URIs]
includeAllAxioms