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Add new methods to photosynthesis functions #1862

@kmurphy61

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@kmurphy61

There are additional file types with updated Phenovation cameras that cannot be imported with photosynthesis.read_cropreporter. There are additional traits that can then be calculated. New features include:

  • - import PMT file type with photosynthesis.read_cropreporter
  • - import GFP and RFP file types with photosynthesis.read_cropreporter
  • - import APH file type with photosynthesis.read_cropreporter
  • - add function to calculate Fv''/Fm'' (second dark adapted measurements from PAM method and PMT files)
  • - add functions to calculate qE, qI, qL, qN, and qP (components of NPQ that are possible with the PAM method and PMT files)
  • - add functions to calculate ETR (electron transport rate) from alpha (APH)
  • - add function to calculate O, I, and P from dark-adapted fluorescence induction curve in visualize.chlorophyll_fluorescence and visualize the OJIP curve, which is the log of the induction curve

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