0.50.1

🧪 Tests

• skip test_nwb2asset_remote_asset if no fsspec installed #1239 (@yarikoptic)

Authors: 1

• Yaroslav Halchenko (@yarikoptic)

0.50.0

🚀 Enhancement

• Add --ignore ID_REGEX option to dandi validate #1234 (@jwodder)
• download: support for downloading multiple URLs at once; dandiset path is now included in the report #1231 (@jwodder)
• Merging bids_validate into validate, stop validating nested BIDS. #1203 (@TheChymera @jwodder)
• Support re-extracting metadata from remote assets #1214 (@jwodder)

🐛 Bug Fix

• Inform user with a warning in case of jobs > 1 but non pyout format #1222 (@yarikoptic)
• BF: add missing f- for a string #1228 (@yarikoptic)
• Don't even test for cp --reflink support on Windows #1221 (@jwodder)
• Filter out pyout logs from logfile by default #1220 (@jwodder)
• Metadata: add extraction of strain from nwb files #1216 (@satra @yarikoptic)

🏠 Internal

• Use pathlib more in tests #1233 (@jwodder)

📝 Documentation

• Added distribution badge (sadly only one ATM) #1224 (@TheChymera)
• List in documentation the "high level" interfaces corresponding to CLI #1200 (@yarikoptic)

🧪 Tests

• Update parse_purlobourl() test for change to rat metadata #1227 (@jwodder)
• Revert "Temporarily disable all tests which talk to obolibrary" - ontobee said to be back #1226 (@yarikoptic)
• Fix tests: avoid obolibrary (for now) and pynwb 2.3.0 (forever) #1225 (@yarikoptic)
• Test against Python 3.11 #1143 (@jwodder)

Authors: 4

• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• Satrajit Ghosh (@satra)
• Yaroslav Halchenko (@yarikoptic)

0.49.1

🐛 Bug Fix

• Update for fix to Zarr upload procedure #1215 (@jwodder)

🧪 Tests

• Restore testing against Windows with Python 3.10 #1213 (@jwodder)

Authors: 1

• John T. Wodder II (@jwodder)

0.49.0

🚀 Enhancement

• Update for new Zarr upload procedure; remove no longer needed service-scripts #1202 (@jwodder)
• BF+RF validation #1209 (@yarikoptic)

🐛 Bug Fix

• Make RemoteDandiset.get_version() return a VersionInfo instance with validation error fields #1210 (@jwodder)
• Improve messages displayed when an upload fails #1204 (@jwodder)
• RF/BF: make find_parent_directory_containing operate on absolute path #1188 (@yarikoptic)

🏠 Internal

• Pass $USER to tox envs #1201 (@jwodder)
• boost isort in precommit to 5.12.0 to overcome issue with poetry #1199 (@yarikoptic)

📝 Documentation

• Move doc/design under docs/ where the rest of docs reside #1198 (@yarikoptic)
• Further improve README.md: point to specific sections of handbook, remove lengthy dandi ls --help example #1193 (@melster1010)

🧪 Tests

• Fix type errors; unbound mypy #1207 (@jwodder)
• We no longer need to catch warning as hdmf has fixed the bug #1194 (@TheChymera)
• Joint BIDS-NWB metadata extraction. #1183 (@TheChymera)
• Fix for newer HDMF #1191 (@TheChymera)

🔩 Dependency Updates

• Blacklisting the most recent hdmf version 3.5.0 forbidding its use and breaking CI/testing. #1190 (@TheChymera)

Authors: 4

• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• Mary Elise Dedicke (@melster1010)
• Yaroslav Halchenko (@yarikoptic)

0.48.1

🐛 Bug Fix

• Fail upload only for validation ERRORs and not necessarily WARNINGs or HINTs + log all errors #1186 (@yarikoptic)
• Don't warn on unexpected formats for "next" page URLs #1184 (@jwodder)
• Upload test to check for metadata #1180 (@TheChymera)

Authors: 3

• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

0.48.0

🚀 Enhancement

• Update client for change in Zarr entries API #1175 (@jwodder)

Authors: 1

• John T. Wodder II (@jwodder)

0.47.0

🚀 Enhancement

• Add validation of filepaths for non-BIDS NWB assets #1173 (@jwodder)
• Exclude special dotfiles from Zarrs #1147 (@jwodder)
• Structured validation results #1104 (@jwodder @yarikoptic @TheChymera)

🐛 Bug Fix

• Allow user to specify mandatory (if not empty) fields in organize #1171 (@yarikoptic @jwodder)
• BF: convert str errors from checking nwb version into proper ValidationResult #1174 (@yarikoptic)
• Tests for ls reinstated, underlying function fixed, support for ZARR-BIDS files added. #1164 (@TheChymera @jwodder)
• Add CodeQL workflow for GitHub code scanning and fix few bugs it detected #1165 (@lgtm-migrator @jwodder @lgtm-com[bot])
• Corrected reporting function logic to complete group message variable #1166 (@TheChymera)
• Renamed failing test, added prospective use case for NWBI warning. #1162 (@TheChymera)
• Use cached namespace validation #1149 (@CodyCBakerPhD)

🏠 Internal

• Make list_paths() include dotfiles #1142 (@jwodder)

📝 Documentation

• dandi-cli readme edit #1170 (@melster1010)
• Remove Parameters description from docstring used by click #1150 (@yarikoptic)

🧪 Tests

• No longer mark test_rename_type_mismatch as xfailing #1161 (@jwodder)
• Fix typing error under mypy 0.990 #1156 (@jwodder)
• Update test_validate_nwb_path_grouping test #1157 (@jwodder)
• Fixed logic and commented a temporarily broken BIDS (lacking README) dataset #1148 (@TheChymera)
• Installing hdf5 for Python 3.10 is no longer needed #1145 (@jwodder)
• Fix a typing issue involving the outdated tmpdir_factory #1144 (@jwodder)

Authors: 7

• @lgtm-com[bot]
• Cody Baker (@CodyCBakerPhD)
• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• LGTM Migrator (@lgtm-migrator)
• Mary Elise Dedicke (@melster1010)
• Yaroslav Halchenko (@yarikoptic)

0.46.6

🐛 Bug Fix

• Don't try to cancel failed Zarr uploads twice #1139 (@jwodder)

📝 Documentation

• adding testing instructions #1123 (@djarecka)

🧪 Tests

• Add DANDI_TESTS_PULL_DOCKER_COMPOSE envvar #1141 (@jwodder)

Authors: 2

• Dorota Jarecka (@djarecka)
• John T. Wodder II (@jwodder)

0.46.5

🐛 Bug Fix

• ENH: lgr.debug that we are using DANDI_API_KEY provided key #1133 (@yarikoptic)
• add zebrafish to species list #1129 (@satra)
• Make dandi ls properly detect embargoed Dandisets #1132 (@jwodder)

🏠 Internal

• Make internal Zarr-checksumming tree types support empty Zarrs #1138 (@jwodder)
• Simplify implementations of get_asset() methods #1136 (@jwodder)
• Update GitHub Actions action versions #1135 (@jwodder)

Authors: 3

• John T. Wodder II (@jwodder)
• Satrajit Ghosh (@satra)
• Yaroslav Halchenko (@yarikoptic)

0.46.4

🏠 Internal

• Update client-side publication workflow #1125 (@jwodder)

🧪 Tests

• increase number of trials in docker_compose_setup to 25 #1122 (@djarecka)
• Pull latest Docker images before spinning up Compose #1121 (@jwodder)

Authors: 2

• Dorota Jarecka (@djarecka)
• John T. Wodder II (@jwodder)