Got “At line 172 of file H5_ff.F90 Fortran runtime error: Recursive call to nonrecursive procedure 'h5open_f'”

[cherry12306]

I have successfully installed the DAMASK 3.0.0 source code and completed the PETSc tests, all of which passed. Running some of the built-in examples works fine. However, when I attempt a nonlocal computation, I encounter the following error:

At line 172 of file H5_ff.F90
Fortran runtime error: Recursive call to nonrecursive procedure 'h5open_f'

This issue occurred after reinstalling DAMASK; it was the same error I encountered during my first installation. It seems that HDF5 might not be handling parallel processing properly. Could you advise me on how to address this issue? I would greatly appreciate any assistance you could provide.

I downgraded gfortran to version 9.5. However, I encountered the following issue during computation:

Increment 22566/1000000-11/16 @ Iteration 1≤56≤100

deformation gradient aim =
1.0994363 0.0000000 0.0000000
0.0045131 0.9395938 0.0000000
0.0000000 0.0000000 1.0799794

... evaluating constitutive response ......................................
Cell 489 failed (mechanics)

Piola--Kirchhoff stress / MPa =
71.9801 489.7744 0.0000
489.9044 24.7061 -0.0000
0.0000 -0.0000 75.6616

... doing gamma convolution ...............................................

... evaluating constitutive response ......................................

┌─────────────────────────────────────────────────────────────────────┐
│ error 402 │
├─────────────────────────────────────────────────────────────────────┤
│ invalid orientation specified │
│ fromMatrix │
│ │
└─────────────────────────────────────────────────────────────────────┘

┌─────────────────────────────────────────────────────────────────────┐
│ error 402 │
├─────────────────────────────────────────────────────────────────────┤
│ invalid orientation specified │
│ fromMatrix │
│ │
└─────────────────────────────────────────────────────────────────────┘

┌─────────────────────────────────────────────────────────────────────┐
│ error 402 │
├─────────────────────────────────────────────────────────────────────┤
At line 172 of file H5_ff.F90
Fortran runtime error: Recursive call to nonrecursive procedure 'h5open_f'
│ invalid orientation specified │

Error termination. Backtrace:
│ fromMatrix │
│ │
└─────────────────────────────────────────────────────────────────────┘
At line 172 of file H5_ff.F90
Fortran runtime error: Recursive call to nonrecursive procedure 'h5open_f'

Error termination. Backtrace:
┌─────────────────────────────────────────────────────────────────────┐
│ error 402 │
├─────────────────────────────────────────────────────────────────────┤
│ invalid orient │
│ fromMatrix │
│ │
└─────────────────────────────────────────────────────────────────────┘
DAMASK_grid: H5SL.c:807: H5SL_insert_common: Assertion !_drop->forward[_i] || !(*(const hid_t *)((_drop->forward[_i])->key) < *(const hid_t )key)' failed.
DAMASK_grid: H5SL.c:1250: H5SL_remove: Assertion !_drop->forward[_i] || !((const hid_t *)((_drop->forward[_i])->key) < *(const hid_t *)key)' failed.

Program received signal SIGABRT: Process abort signal.

Backtrace for this error:

Program received signal SIGABRT: Process abort signal.

Backtrace for this error:
#0 0x7f85f5423e59 in ???
#1 0x7f85f5424a71 in ???
#2 0x7f85f5425082 in ???
#3 0x7f85f7837ae8 in __h5lib_MOD_h5open_f
at /home/cairui/DAMASK/petsc-3.15.3/arch-linux-c-opt/externalpackages/hdf5-1.12.0/fortran/src/H5_ff.F90:172
#4 0x5c67a0b724d7 in ???
#5 0x5c67a0aa8339 in ???
#6 0x5c67a0b7a31e in ???
#7 0x5c67a0ae79a7 in ???
#8 0x5c67a0ac891a in ???
#9 0x7f85f5cbe976 in ???
#10 0x5c67a0ac9bad in ???
#11 0x5c67a0bb7a1e in ???
#12 0x5c67a0ba23d0 in ???
#13 0x7f85f6bfb634 in ???
#14 0x7f85f6bdeed9 in ???
#15 0x7f85f6c0f199 in ???
#16 0x7f85f6ba8630 in ???
#17 0x7f85f6ba678d in ???
#18 0x7f85f6c1d268 in ???
#19 0x7f85f6c26ed5 in ???
#20 0x5c67a0ba5555 in ???
#21 0x5c67a0b89305 in ???
#22 0x5c67a0a9710e in ???
#23 0x7f85f502a1c9 in __libc_start_call_main
at ../sysdeps/nptl/libc_start_call_main.h:58
#24 0x7f85f502a28a in __libc_start_main_impl
at ../csu/libc-start.c:360
#25 0x5c67a0a97144 in ???
#26 0xffffffffffffffff in ???
DAMASK_grid: H5SL.c:1250: H5SL_remove: Assertion !_drop->forward[_i] || !(*(const hid_t *)((_drop->forward[_i])->key) < *(const hid_t *)key)' failed.

Program received signal SIGABRT: Process abort signal.

Backtrace for this error:
#0 0x7f85f5423e59 in ???
#1 0x7f85f5424a71 in ???
#2 0x7f85f5425082 in ???
#3 0x7f85f7837ae8 in __h5lib_MOD_h5open_f
at /home/cairui/DAMASK/petsc-3.15.3/arch-linux-c-opt/externalpackages/hdf5-1.12.0/fortran/src/H5_ff.F90:172
#4 0x5c67a0b724d7 in ???
#5 0x5c67a0aa8339 in ???
#6 0x5c67a0b7a31e in ???
#7 0x5c67a0ae79a7 in ???
#8 0x5c67a0ac891a in ???
#9 0x7f85f5cc879e in ???
#10 0x7f85f509ca93 in start_thread
at ./nptl/pthread_create.c:447
#11 0x7f85f5129c3b in clone3
at ../sysdeps/unix/sysv/linux/x86_64/clone3.S:78
#12 0xffffffffffffffff in ???

I’d like to ask if you've encountered a similar issue before. This seems to be an HDF5 call error.

[MarDiehl]

pls. don't double post.