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Fusion_hg38_environment.yml
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Fusion_hg38_environment.yml
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name: Fusion_hg38
channels:
- r
- anaconda
- conda-forge
- bioconda
- defaults
dependencies:
- cmake=3.9.1=hd1fb129_0
- curl=7.61.0=h84994c4_0
- expat=2.2.4=hc00ebd1_1
- gsl=2.2.1=h0743c53_2
- libcurl=7.61.0=h1ad7b7a_0
- libedit=3.1.20170329=h6b74fdf_2
- libgcc-ng=7.2.0=hdf63c60_3
- libgfortran=3.0.0=1
- libuv=1.22.0=h14c3975_0
- ncurses=6.1=hf484d3e_0
- readline=7.0=ha6073c6_4
- rhash=1.3.6=hb7f436b_0
- zlib=1.2.11=ha838bed_2
- bbmap=36.32=0
- bedtools=2.27.1=he941832_2
- blast=2.5.0=hc0b0e79_3
- blat=36=0
- bowtie=1.2.2=py27h2d50403_1
- bowtie2=2.3.4.3=py27h2d50403_0
- bwa=0.7.17=ha92aebf_3
- ericscript=0.5.5=3
- gmap=2018.07.04=pl526he4cf2ce_0
- java-jdk=8.0.92=1
- libdb=6.1.26=0
- libdeflate=1.0=h470a237_0
- mysql-connector-c=6.1.6=2
- perl-app-cpanminus=1.7044=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-capture-tiny=0.36=pl526_2
- perl-carp=1.38=pl526_1
- perl-common-sense=3.74=pl526_2
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.161=pl526_2
- perl-db-file=1.835=pl526h470a237_6
- perl-encode=2.88=pl526_1
- perl-exporter=5.72=pl526_1
- perl-extutils-cppguess=0.12=pl526h2d50403_2
- perl-extutils-makemaker=7.34=pl526_2
- perl-io-gzip=0.20=pl526h1341992_2
- perl-json-xs=3.04=pl526h2d50403_0
- perl-mime-base64=3.15=pl526_1
- perl-parent=0.236=pl526_1
- perl-set-intervaltree=0.11=pl526_1
- perl-types-serialiser=1.0=pl526_2
- perl-uri=1.74=pl526_0
- perl-xsloader=0.24=pl526_0
- samtools=0.1.19=2
- seqtk=1.3=ha92aebf_0
- star=2.6.1b=0
- star-fusion=1.5.0=0
- tabix=0.2.6=ha92aebf_0
- tophat=2.1.1=py27_0
- ucsc-gtftogenepred=366=hdd26221_0
- blas=1.1=openblas
- boost=1.63.0=py27_5
- boost-cpp=1.63.0=2
- bzip2=1.0.6=h470a237_2
- ca-certificates=2018.11.29=ha4d7672_0
- cairo=1.14.12=he6fea26_5
- certifi=2018.11.29=py27_1000
- fontconfig=2.13.1=h65d0f4c_0
- freetype=2.9.1=h6debe1e_4
- gettext=0.19.8.1=h5e8e0c9_1
- glib=2.55.0=h464dc38_2
- graphite2=1.3.12=hfc679d8_1
- harfbuzz=1.9.0=h08d66d9_0
- icu=58.2=hfc679d8_0
- jpeg=9c=h470a237_1
- krb5=1.14.6=0
- libgcc=7.2.0=h69d50b8_2
- libiconv=1.15=h470a237_3
- libpng=1.6.34=ha92aebf_2
- libssh2=1.8.0=h5b517e9_2
- libtiff=4.0.9=he6b73bb_2
- libuuid=2.32.1=h470a237_2
- libxcb=1.13=h470a237_2
- libxml2=2.9.8=h422b904_5
- numpy=1.15.4=py27_blas_openblashb06ca3d_0
- openblas=0.3.3=ha44fe06_1
- openssl=1.0.2p=h470a237_1
- pango=1.40.14=he752989_2
- pcre=8.39=0
- perl=5.26.2=h470a237_0
- pixman=0.34.0=h470a237_3
- pthread-stubs=0.4=h470a237_1
- python=2.7.15=h33da82c_4
- r-ada=2.0_5=r3.4.1_0
- r-base=3.4.1=h4fe35fd_8
- r-rpart=4.1_13=r341hc070d10_2
- sqlite=3.25.2=hb1c47c0_0
- tbb=2019.1=h2d50403_0
- tk=8.6.8=ha92aebf_0
- xorg-kbproto=1.0.7=h470a237_2
- xorg-libice=1.0.9=h470a237_4
- xorg-libsm=1.2.3=h8c8a85c_0
- xorg-libx11=1.6.6=h470a237_0
- xorg-libxau=1.0.8=h470a237_6
- xorg-libxdmcp=1.1.2=h470a237_7
- xorg-libxext=1.3.3=h470a237_4
- xorg-libxrender=0.9.10=h470a237_2
- xorg-libxt=1.1.5=h470a237_2
- xorg-renderproto=0.11.1=h470a237_2
- xorg-xextproto=7.3.0=h470a237_2
- xorg-xproto=7.0.31=h470a237_7
- xz=5.2.4=h470a237_1
- libffi=3.2.1=hd88cf55_4
- libstdcxx-ng=8.2.0=hdf63c60_1
- pip=10.0.1=py27_0
- setuptools=40.4.3=py27_0
- wheel=0.32.2=py27_0
- r=3.4.1=r3.4.1_0
- r-boot=1.3_19=r3.4.1_0
- r-class=7.3_14=r3.4.1_0
- r-cluster=2.0.6=r3.4.1_0
- r-codetools=0.2_15=r3.4.1_0
- r-foreign=0.8_68=r3.4.1_0
- r-kernsmooth=2.23_15=r3.4.1_0
- r-lattice=0.20_35=r3.4.1_0
- r-mass=7.3_47=r3.4.1_0
- r-matrix=1.2_10=r3.4.1_0
- r-mgcv=1.8_17=r3.4.1_0
- r-nlme=3.1_131=r3.4.1_0
- r-nnet=7.3_12=r3.4.1_0
- r-recommended=3.4.1=r3.4.1_0
- r-spatial=7.3_11=r3.4.1_0
- r-survival=2.41_3=r3.4.1_0
prefix: /diskmnt/Projects/Users/dcui/Software/anaconda3/envs/Fusion_hg38