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Hello,
I get this error just after suite2p finishes detecting ROIs. I'm running the "run_pipeline_tiffs_or_batch.ipynb" jupyter notebook in jupyter lab.
NameError Traceback (most recent call last) in 13 14 # run one experiment ---> 15 opsEnd = run_s2p(ops=ops,db=db)
~/miniconda3/envs/suite2p/lib/python3.7/site-packages/suite2p/run_s2p.py in run_s2p(ops, db) 201 t11=tic() 202 print('----------- ROI DETECTION AND EXTRACTION') --> 203 ops1[ipl] = roiextract.roi_detect_and_extract(ops1[ipl]) 204 ops = ops1[ipl] 205 fpath = ops['save_path']
~/miniconda3/envs/suite2p/lib/python3.7/site-packages/suite2p/roiextract.py in roi_detect_and_extract(ops) 229 "classifiers/classifier.npy" 230 ) --> 231 shutil.copy(classorig, classfile) 232 print('NOTE: applying classifier %s'%classfile) 233 iscell = classifier.run(classfile, stat, keys=['npix_norm', 'compact', 'skew'])
Do you have an idea what the problem might be?
Thanks,
Evan
The text was updated successfully, but these errors were encountered:
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Hello,
I get this error just after suite2p finishes detecting ROIs. I'm running the "run_pipeline_tiffs_or_batch.ipynb" jupyter notebook in jupyter lab.
NameError Traceback (most recent call last)
in
13
14 # run one experiment
---> 15 opsEnd = run_s2p(ops=ops,db=db)
~/miniconda3/envs/suite2p/lib/python3.7/site-packages/suite2p/run_s2p.py in run_s2p(ops, db)
201 t11=tic()
202 print('----------- ROI DETECTION AND EXTRACTION')
--> 203 ops1[ipl] = roiextract.roi_detect_and_extract(ops1[ipl])
204 ops = ops1[ipl]
205 fpath = ops['save_path']
~/miniconda3/envs/suite2p/lib/python3.7/site-packages/suite2p/roiextract.py in roi_detect_and_extract(ops)
229 "classifiers/classifier.npy"
230 )
--> 231 shutil.copy(classorig, classfile)
232 print('NOTE: applying classifier %s'%classfile)
233 iscell = classifier.run(classfile, stat, keys=['npix_norm', 'compact', 'skew'])
NameError: name 'shutil' is not defined
Do you have an idea what the problem might be?
Thanks,
Evan
The text was updated successfully, but these errors were encountered: