From 0bee039a358740aa50c462a8f7f12f1f73cae686 Mon Sep 17 00:00:00 2001 From: clintval Date: Fri, 26 Jul 2024 09:33:19 -0400 Subject: [PATCH] docs: add bioconda badges to README --- README.md | 4 ++-- neodisambiguate/src/io/cvbio/neodisambiguate/bam/Bams.scala | 3 +-- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 0dae3c9..cfeb0a3 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ # neodisambiguate - - +[![Install with bioconda](https://img.shields.io/badge/Install%20with-bioconda-brightgreen.svg)](http://bioconda.github.io/recipes/neodisambiguate/README.html) +[![Anaconda Version](https://anaconda.org/bioconda/neodisambiguate/badges/version.svg)](http://bioconda.github.io/recipes/neodisambiguate/README.html) [![Unit Tests](https://github.com/clintval/neodisambiguate/actions/workflows/unit-tests.yml/badge.svg?branch=main)](https://github.com/clintval/neodisambiguate/actions/workflows/unit-tests.yml?query=branch%3Amain) [![Java Version](https://img.shields.io/badge/java-8,11,17,21-c22d40.svg)](https://github.com/AdoptOpenJDK/homebrew-openjdk) [![Language](https://img.shields.io/badge/language-scala-c22d40.svg)](https://www.scala-lang.org/) diff --git a/neodisambiguate/src/io/cvbio/neodisambiguate/bam/Bams.scala b/neodisambiguate/src/io/cvbio/neodisambiguate/bam/Bams.scala index 4d9df38..04849a0 100644 --- a/neodisambiguate/src/io/cvbio/neodisambiguate/bam/Bams.scala +++ b/neodisambiguate/src/io/cvbio/neodisambiguate/bam/Bams.scala @@ -6,13 +6,12 @@ import com.fulcrumgenomics.bam.Template import com.fulcrumgenomics.bam.api.SamSource import com.fulcrumgenomics.commons.CommonsDef.SafelyClosable import com.fulcrumgenomics.commons.collection.SelfClosingIterator -import com.fulcrumgenomics.commons.util.LazyLogging import enumeratum.EnumEntry import io.cvbio.neodisambiguate.CommonsDef.SamTag import io.cvbio.neodisambiguate.bam.Bams.ReadOrdinal.{Read1, Read2} /** Common methods for working with SAM/BAM files. */ -object Bams extends LazyLogging { +object Bams { /** Implicit class that makes working with a [[Template]] easier. */ implicit class TemplateUtil(private val template: Template) {