support sciencedirect suppl

Author: Miachol

README.md

@@ -23,6 +23,30 @@ For website spider (optional):
 
 - Headless Chrome is required for some of website with JavaScript driven render pages. For windows users, you may need to create an alias of Chrome to make [chromedp](https://github.com/chromedp/chromedp) work.
 
+```bash
+# To resolve `[FATA] exec: "google-chrome": executable file not found in $PATH` error:
+# option 1: install Chrome in your OS
+## centos
+sudo yum install liberation-fonts
+sudo yum -y install libXss*
+sudo yum install libappindicator*
+wget https://dl.google.com/linux/direct/google-chrome-stable_current_x86_64.rpm 
+sudo rpm -ivh google-chrome-stable_current_x86_64.rpm
+
+## ubuntu
+wget https://dl.google.com/linux/direct/google-chrome-stable_current_amd64.deb
+sudo dpkg -i google-chrome-stable_current_amd64.deb
+sudo apt install -f
+
+# option 2: run bget in the headless-shell docker container
+docker run -d -p 9222:9222 --rm --name headless-shell -v /path_contains_bget/:/tmp/bget chromedp/headless-shell
+docker exec -it headless-shell /bin/bash
+
+# set more timeout for poor network access
+bget doi 10.1016/j.devcel.2017.03.001 --suppl --timeout 100
+```
+
+
 For raw sequencing data query (optional):
 
 - [sra-tools](https://github.com/ncbi/sra-tools) for SRA and dbGAP database: `bget i sratools`;
@@ -33,15 +57,15 @@ For raw sequencing data query (optional):
 
 ```bash
 # windows
-wget https://github.com/openanno/bget/releases/download/v0.3.0/bget.exe
+wget https://github.com/openanno/bget/releases/download/v0.3.1/bget.exe
 
 # osx
-wget https://github.com/openanno/bget/releases/download/v0.3.0/bget_osx
+wget https://github.com/openanno/bget/releases/download/v0.3.1/bget_osx
 mv bget_osx bget
 chmod a+x bget
 
 # linux
-wget https://github.com/openanno/bget/releases/download/v0.3.0/bget_linux64
+wget https://github.com/openanno/bget/releases/download/v0.3.1/bget_linux64
 mv bget_linux64 bget
 chmod a+x bget
 

chrome/doi.go

@@ -32,7 +32,7 @@ func DoiSupplURLs(url string, timeout time.Duration, proxy string) []string {
 	//err := cdp.Run(ctx, visibleNejm("https://www.nejm.org/doi/full/10.1056/NEJMoa1902226", &attbs))
 	if strings.Contains(url, "www.nejm.org") {
 		err = cdp.Run(ctx, visibleNejm(url, &attbs))
-	} else if stringo.StrDetect(url, "sciencedirect.com|/10.1016/") {
+	} else if stringo.StrDetect(url, "sciencedirect.com|/10.1016/|www.cell.com") {
 		err = cdp.Run(ctx, visibleScienceDirect(url, &attbs))
 	} else if strings.Contains(url, "www.ncbi.nlm.nih.gov/Traces/study") {
 		err = cdp.Run(ctx, visibleSraRunSelect(url, &attbs, ctx))
@@ -177,5 +177,5 @@ func visibleDownloadTask(url string, ctx context.Context) cdp.Tasks {
 }
 
 //func main() {
-//GetURLFile("https://linkinghub.elsevier.com/retrieve/pii/S2215036619303943", 145*time.Second, "http://lee_jianfeng:[email protected]:8000")
+//DoiSupplURLs("https://www.sciencedirect.com/science/article/pii/S1934590919303078?via=ihub", 145*time.Second)
 //}

go.mod

@@ -21,6 +21,7 @@ require (
 	github.com/openbiox/ligo v0.0.0-20200607024921-dd2356ca56a1
 	github.com/sirupsen/logrus v1.6.0
 	github.com/spf13/cobra v1.0.0
+	github.com/tebeka/selenium v0.9.9 // indirect
 	github.com/tidwall/pretty v1.0.1
 	github.com/vbauerster/mpb/v5 v5.2.2
 	golang.org/x/crypto v0.0.0-20200604202706-70a84ac30bf9 // indirect