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setup.py
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import setuptools
import sys
import os
from setuptools import setup, find_packages, Extension
from distutils.version import LooseVersion
if LooseVersion(setuptools.__version__) < LooseVersion('1.1'):
print("Version detected:", LooseVersion(setuptools.__version__))
raise ImportError(
"the CGAT code collection requires setuptools 1.1 higher")
with open("README.md", "r") as fh:
long_description = fh.read()
########################################################################
########################################################################
# Import setuptools
# Use existing setuptools, otherwise try ez_setup.
try:
import setuptools
except ImportError:
# try to get via ez_setup
# ez_setup did not work on all machines tested as
# it uses curl with https protocol, which is not
# enabled in ScientificLinux
import ez_setup
ez_setup.use_setuptools()
########################################################################
########################################################################
IS_OSX = sys.platform == 'darwin'
########################################################################
########################################################################
# collect CGAT version
sys.path.insert(0, "cgatshowcase")
import version
version = version.__version__
###############################################################
###############################################################
# Define dependencies
#
major, minor1, minor2, s, tmp = sys.version_info
if major < 3:
raise SystemExit("""cgat-showcase requires Python 3 or later.""")
cgat_package_dirs = {'cgatshowcase': 'cgatshowcase'}
##########################################################
##########################################################
# Classifiers
classifiers = """
Intended Audience :: Science/Research
Intended Audience :: Developers
License :: OSI Approved
Programming Language :: Python
Topic :: Software Development
Topic :: Scientific/Engineering
Operating System :: POSIX
Operating System :: Unix
Operating System :: MacOS
"""
setup(
# package information
name='cgatshowcase',
version=version,
description='cgatshowcase : the Computational Genomics Analysis Toolkit example pipeline/workflow',
author='Adam Cribbs',
author_email='[email protected]',
license="MIT",
platforms=["any"],
keywords="computational genomics",
long_description=long_description,
classifiers=[_f for _f in classifiers.split("\n") if _f],
url="https://github.com/cgat-developers/cgat-showcase",
# package contents
packages=find_packages(),
package_data={'cgatshowcase':['cgatshowcase/R/*.R', 'cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/*', '/cgatshowcase/pipeline_transdiffexprs/*']},
package_dir=cgat_package_dirs,
include_package_data=True,
entry_points={
'console_scripts': ['cgatshowcase = cgatshowcase.entry:main']
},
# other options
zip_safe=False,
test_suite="tests",
)