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1. Gibbons-Lab/mbtools Gibbons-Lab/mbtools Public

   R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

   R 23 9

2. micom-dev/micom micom-dev/micom Public

   Python package to study microbial communities using metabolic modeling.

   Python 94 18

3. opencobra/cobrapy opencobra/cobrapy Public

   COBRApy is a package for constraint-based modeling of metabolic networks.

   Python 470 218

4. resendislab/corda resendislab/corda Public

   An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

   Python 23 8

5. Convert image to ascii art Convert image to ascii art

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   import sys; from PIL import Image; import numpy as np

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   chars = np.asarray(list(' .,:;irsXA253hMHGS#9B&@'))

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   if len(sys.argv) != 4: print( 'Usage: ./asciinator.py image scale factor' ); sys.exit()

6. Gibbons-Lab/isb_course_2022 Gibbons-Lab/isb_course_2022 Public

   Materials and presentation for the 2022 ISB Microbiome course.

   Jupyter Notebook 27 13