Diginorm v0.1 by Chris Boursnell <[email protected]>
Digital Normalisation by median
Totally ripped off from Titus Brown (http://khmer.readthedocs.org/en/v1.1/)
USAGE:
diginorm <options>
OPTIONS:
--left, -l <s>: fastq file
--right, -r <s>: second fastq file
--output, -o <s>: output fastq file
--k, -k <i>: size of kmers to use (default: 21)
--buckets, -b <i>: number of buckets (default: 4)
--bucket-size, -s <i>: size of buckets (default: 10000)
--cutoff, -c <i>: cutoff coverage (default: 20)
--help, -h: Show this message