Files

.github
container
examples
- Instructions for using plugins
- data/breast
- .gitignore
- TileEffect1.ipynb
- TileEffect2.ipynb
- batch_convert_to_DZI.ipynb
- breastcancer.ipynb
- fiji_alignment_dot_extraction.py
- giotto2tmap.py
- pixel_decoding_starfish.ipynb
- relabel.py
- spage2vec.png
- spage2vec_TM.ipynb
- squidpy2tmap.ipynb
- starfish2tmap.py
- tissuumaps_cnn_example.ipynb
plugins_repo
standalone
tissuumaps
.dockerignore
.gitattributes
.gitignore
.pre-commit-config.yaml
CHANGELOG.md
CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg

examples

Fix linting / ruff / black

Oct 11, 2023

b564722 · Oct 11, 2023

This branch is 22 commits ahead of, 41 commits behind TissUUmaps/TissUUmaps:master.

Name		Name	Last commit message	Last commit date
parent directory ..
Instructions for using plugins		Instructions for using plugins	Fix linting	Dec 15, 2022
data/breast		data/breast	spage2vec added	Nov 26, 2021
.gitignore		.gitignore	Add examples/data to gitignore	Nov 23, 2021
TileEffect1.ipynb		TileEffect1.ipynb	Tile Effect notebooks	Jan 3, 2022
TileEffect2.ipynb		TileEffect2.ipynb	Tile Effect notebooks	Jan 3, 2022
batch_convert_to_DZI.ipynb		batch_convert_to_DZI.ipynb	Update batch_convert_to_DZI.ipynb	Jun 14, 2022
breastcancer.ipynb		breastcancer.ipynb	Fix jupyter module default random shape radio button	Nov 12, 2021
fiji_alignment_dot_extraction.py		fiji_alignment_dot_extraction.py	Fix linting / ruff / black	Oct 11, 2023
giotto2tmap.py		giotto2tmap.py	Fix linting / ruff / black	Oct 11, 2023
pixel_decoding_starfish.ipynb		pixel_decoding_starfish.ipynb	Add files via upload	May 20, 2022
relabel.py		relabel.py	Add pre-commit rules and apply to repo	May 10, 2022
spage2vec.png		spage2vec.png	spage2vec example added	Nov 26, 2021
spage2vec_TM.ipynb		spage2vec_TM.ipynb	Update spage2vec_TM.ipynb	Nov 30, 2021
squidpy2tmap.ipynb		squidpy2tmap.ipynb	Add files via upload	Dec 9, 2021
starfish2tmap.py		starfish2tmap.py	Fix linting / ruff / black	Oct 11, 2023
tissuumaps_cnn_example.ipynb		tissuumaps_cnn_example.ipynb	rename	Nov 17, 2021