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setup.cfg
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setup.cfg
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# Setup configuration
[metadata]
name = aop2db
version = 0.3.1
description = AOP2DB - Python parser for converting importing adverse outcome pathway data into a relational database.
long_description = file: README.rst
long_description_content_type = text/x-rst
# URLs
url = https://github.com/brucetony/aop2db
project_urls =
Issue Tracker = https://github.com/brucetony/aop2db/issues
Documentation = https://aop2db.readthedocs.io/en/latest/
Source Code = https://github.com/brucetony/aop2db
# Author information
author = Bruce Schultz
author_email = [email protected]
maintainer = Bruce Schultz
maintainer_email = [email protected]
# License Information
license = MIT
license_file = LICENSE
# Search tags
classifiers =
Development Status :: 5 - Production/Stable
Environment :: Console
Intended Audience :: Developers
Intended Audience :: Science/Research
License :: OSI Approved :: MIT License
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3 :: Only
Topic :: Scientific/Engineering :: Bio-Informatics
keywords =
Biomedical Database
[options]
install_requires =
Click>=8.0
pandas>=1.3.1
tqdm>=4.62.0
sqlalchemy>=1.4.22
sqlalchemy_utils>=0.37.8
pymysql>=1.0.2
requests>=2.26.0
xmltodict>=0.12.0
cryptography>=35.0.0
lxml>=4.6.5
# Random options
zip_safe = false
python_requires = >=3.8
include_package_data = True
# Where is my code
packages = find:
[options.packages.find]
include =
aop2db
aop2db.*
[options.extras_require]
docs =
sphinx
sphinx-rtd-theme
sphinx-click
sphinx-autodoc-typehints
[options.entry_points]
console_scripts =
aop2db = aop2db.cli:main
########################
# Flake8 Configuration #
########################
[flake8]
ignore =
A003 # class attribute "id" is shadowing a python builtin
I202 # Additional newline in a group of imports.
exclude =
.tox,
.git,
__pycache__,
docs/source/conf.py,
build,
dist,
tests/fixtures/*,
*.pyc,
*.egg-info,
.cache,
.eggs
max-complexity = 20
import-order-style = pycharm
max-line-length = 119
##########################
# Coverage Configuration #
# (.coveragerc) #
##########################
[coverage:run]
branch = True
source = aop2db
omit =
aop2db/__main__.py
tests/*
docs/*
[coverage:paths]
source =
aop2db
.tox/*/lib/python*/site-packages/aop2db
[coverage:report]
show_missing = True
exclude_lines =
def __str__
def __repr__