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host_mtdna.nexus
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host_mtdna.nexus
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#NEXUS
Begin taxa;
Dimensions ntax=24;
Taxlabels
Homo_sapiens
Piliocolobus_badius
Gorilla_gorilla
Pan_troglodytes_troglodytes
Pan_troglodytes_schweinfurthii
Cercopithecus_aethiops_tantalus
Cercopithecus_aethiops_sabaeus
Cercopithecus_aethiops_aethiops
Cercopithecus_aethiops_pygerythrus
Cercopithecus_solatus
Cercopithecus_lhoesti
Cercopithecus_neglectus
Cercopithecus_erythrotis
Cercopithecus_ascanius
Cercopithecus_cephus
Cercopithecus_nictitans
Cercopithecus_albogularis
Cercopithecus_mona
Miopithecus_ogouensis
Mandrillus_sphinx
Cercocebus_atys
Colobus_guereza
Papio_cynocephalus
Cercocebus_torquatus
;
End;
Begin trees;
Translate
1 Homo_sapiens,
2 Piliocolobus_badius,
3 Gorilla_gorilla,
4 Pan_troglodytes_troglodytes,
5 Pan_troglodytes_schweinfurthii,
6 Cercopithecus_aethiops_tantalus,
7 Cercopithecus_aethiops_sabaeus,
8 Cercopithecus_aethiops_aethiops,
9 Cercopithecus_aethiops_pygerythrus,
10 Cercopithecus_solatus,
11 Cercopithecus_lhoesti,
12 Cercopithecus_neglectus,
13 Cercopithecus_erythrotis,
14 Cercopithecus_ascanius,
15 Cercopithecus_cephus,
16 Cercopithecus_nictitans,
17 Cercopithecus_albogularis,
18 Cercopithecus_mona,
19 Miopithecus_ogouensis,
20 Mandrillus_sphinx,
21 Cercocebus_atys,
22 Colobus_guereza,
23 Papio_cynocephalus,
24 Cercocebus_torquatus,
;
tree TREE1 = [&R] (((2[&height_95%_HPD={0.0,1.0996759058912176E-13},host.prob=1.0,length_range={0.12388827252810003,0.15383049957079997},height_median=3.0031532816110484E-14,length_95%_HPD={0.12880016333909997,0.14613349646790003},height=3.8750605537626E-14,host="Piliocolobus_badius",height_range={0.0,1.7003065622134272E-13},host.set.prob={1.0},length=0.13831633953177697,length_median=0.13819489751689998,host.set={"Piliocolobus_badius"}]:0.13819489751697997,22[&height_95%_HPD={0.0,1.0996759058912176E-13},host.prob=1.0,length_range={0.12388827252810003,0.15383049957079997},height_median=3.0031532816110484E-14,length_95%_HPD={0.12880016333909997,0.14613349646790003},height=3.8750605537626E-14,host="Colobus_guereza",height_range={0.0,1.7003065622134272E-13},host.set.prob={1.0},length=0.13831633953177697,length_median=0.13819489751689998,host.set={"Colobus_guereza"}]:0.13819489751697997)[&height_95%_HPD={0.12880016333912794,0.14613349646793794},length_range={0.11196327318220001,0.14570184166669997},host="Piliocolobus_badius",length_95%_HPD={0.1175789186797,0.1397309937772},height_range={0.12388827252810997,0.15383049957079997},host.prob=0.3892282065519156,height_median=0.13819489751701,height=0.13831633953181555,posterior=1.0,host.set.prob={0.012770682953914493,0.00555247084952804,0.0138811771238201,0.012215435868961688,0.004441976679622432,0.3892282065519156,0.014991671293725709,0.36923931149361466,0.018878400888395337,0.006107717934480844,0.00277623542476402,0.014991671293725709,0.003886729594669628,0.007218212104386452,0.01665741254858412,0.00277623542476402,0.004441976679622432,0.008883953359244865,0.027207107162687396,0.008883953359244865,0.00832870627429206,0.009439200444197668,0.03164908384230983,0.00555247084952804},length=0.12784655160137445,length_median=0.12766748059530003,host.set={"P._t._schweinfurthii","Cercopithecus_albogularis","Homo_sapiens","Cercopithecus_mona","Cercopithecus_solatus","Piliocolobus_badius","Mandrillus_sphinx","Colobus_guereza","Gorilla_gorilla","Cercopithecus_cephus","Cercopithecus_aethiops_aethiops","Cercocebus_atys","Cercopithecus_ascanius","Pan_troglodytes_troglodytes","Cercocebus_torquatus","Cercopithecus_aethiops_pygerythrus","Cercopithecus_aethiops_tantalus","Cercopithecus_lhoesti","Miopithecus_ogouensis","Cercopithecus_erythrotis","Cercopithecus_nictitans","Cercopithecus_neglectus","Papio_cynocephalus","Cercopithecus_aethiops_sabaeus"}]:0.12789126616659,((19[&height_95%_HPD={0.0,1.000310945187266E-13},host.prob=1.0,length_range={0.1193209629766,0.13866235493719997},height_median=3.497202527569243E-14,length_95%_HPD={0.12226794784679998,0.13474454593869997},height=3.941106802989885E-14,host="Miopithecus_ogouensis",height_range={0.0,1.4011014570769476E-13},host.set.prob={1.0},length=0.1285022506591376,length_median=0.1285439091472,host.set={"Miopithecus_ogouensis"}]:0.12854390914717706,(((18[&height_95%_HPD={0.0,8.099076964640517E-14},host.prob=1.0,length_range={0.07072350343484002,0.08474684716996},height_median=3.8968828164342995E-14,length_95%_HPD={0.07333320365134,0.08214963742940001},height=3.97232681691667E-14,host="Cercopithecus_mona",height_range={0.0,1.109667913112844E-13},host.set.prob={1.0},length=0.07762795750975533,length_median=0.0775250626599,host.set={"Cercopithecus_mona"}]:0.07752506265989612,12[&height_95%_HPD={0.0,8.099076964640517E-14},host.prob=1.0,length_range={0.07072350343484002,0.08474684716996},height_median=3.8968828164342995E-14,length_95%_HPD={0.07333320365134,0.08214963742940001},height=3.97232681691667E-14,host="Cercopithecus_neglectus",height_range={0.0,1.109667913112844E-13},host.set.prob={1.0},length=0.07762795750975533,length_median=0.0775250626599,host.set={"Cercopithecus_neglectus"}]:0.07752506265989612)[&height_95%_HPD={0.07333320365139795,0.08214963742943204},length_range={0.01545229067149001,0.02951594417179998},host="Cercopithecus_neglectus",length_95%_HPD={0.01871290101633999,0.027038687712090004},height_range={0.07072350343484102,0.08474684716997},host.prob=0.27318156579677955,height_median=0.07752506265993508,height=0.07762795750979486,posterior=1.0,host.set.prob={0.001665741254858412,0.001665741254858412,0.04997223764575236,0.2620766240977235,0.003886729594669628,0.0416435313714603,0.010549694614103275,0.001110494169905608,0.009994447529150472,0.012770682953914493,0.009439200444197668,0.028872848417545807,0.001110494169905608,0.028872848417545807,0.00555247084952804,0.02387562465297057,0.041088284286507494,0.01776790671848973,0.04886174347584675,0.03164908384230983,0.051637978900610775,0.27318156579677955,0.017212659633536923,0.025541365907828985},length=0.022699427555431653,length_median=0.022676590328159996,host.set={"Homo_sapiens","P._t._schweinfurthii","Cercopithecus_albogularis","Cercopithecus_mona","Piliocolobus_badius","Cercopithecus_solatus","Mandrillus_sphinx","Gorilla_gorilla","Colobus_guereza","Cercopithecus_aethiops_aethiops","Cercocebus_atys","Cercopithecus_cephus","Pan_troglodytes_troglodytes","Cercopithecus_ascanius","Cercocebus_t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End;