Analysis of neutralization data from Loes et al. 2024

Phylogenetic analysis and visualization of H1N1pdm neutralization data from Loes et al. 2024 (GitHub).

Run the workflow

Install the Nextstrain CLI. Clone the seasonal flu workflow.

git clone https://github.com/nextstrain/seasonal-flu.git
cd seasonal-flu

Clone this repository into the flu workflow directory.

git clone https://github.com/blab/loes-2024-neutralization-nextstrain.git

Run the workflow with the build config for this analysis.

nextstrain build . --configfile loes-2024-neutralization-nextstrain/build-configs/loes.yaml

View the resulting tree and measurements panel locally.

nextstrain view auspice