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Welcome to the myvariant.info wiki!

Guideline: JSON documents for variants

{
    "_id": <variant_id>,
    "attr1": <value_1>,
    "attr2": <value_2>
    ...
 }

• <variant_id> should follow HGVS standard.

• a real example:

  { '_id': u'chr1:g.35366C>T', 'allele1': u'C', 'allele2': u'T', 'chrom': u'chr1', 'chromEnd': 35367, 'chromStart': 35366, 'func': u'unknown', 'rsid': u'rs71409357', 'snpclass': u'single', 'strand': u'-' }

Resources:

• MyGene.info

  • http://mygene.info

  • MyGene.info repos

    • https://bitbucket.org/sulab/mygene.hub/src (backend)
    • https://bitbucket.org/sulab/mygene.info/src (frontend)

• mutdb (Mooney lab)

  • missense mutations from COSMIC, UniProt, dbSNP
  • (Sean will send dumps, maybe expose an API)