diff --git a/src/hub/dataload/sources/entrez/go_upload.py b/src/hub/dataload/sources/entrez/go_upload.py index 8bb4992..06aad83 100644 --- a/src/hub/dataload/sources/entrez/go_upload.py +++ b/src/hub/dataload/sources/entrez/go_upload.py @@ -1,6 +1,8 @@ -from .parser import Gene2GOParser import biothings.hub.dataload.uploader as uploader +from .parser import Gene2GOParser + + class EntrezGOUploader(uploader.MergerSourceUploader): name = "entrez_go" @@ -26,22 +28,19 @@ def get_mapping(klass): }, "id": { "type": "keyword", - "normalizer" : "keyword_lowercase_normalizer", - 'copy_to': ['all'], + "normalizer": "keyword_lowercase_normalizer", + "copy_to": ["all"], }, "evidence": { - "type": "text", - "index": False - }, - "pubmed": { - "type": "long", - "index": False + "type": "keyword", + "normalizer": "keyword_lowercase_normalizer", }, + "pubmed": {"type": "long", "index": False}, "category": { - "type": "text", - "index": False - } - } + "type": "keyword", + "normalizer": "keyword_lowercase_normalizer", + }, + }, }, "CC": { "dynamic": False, @@ -51,22 +50,19 @@ def get_mapping(klass): }, "id": { "type": "keyword", - "normalizer" : "keyword_lowercase_normalizer", - 'copy_to': ['all'], + "normalizer": "keyword_lowercase_normalizer", + "copy_to": ["all"], }, "evidence": { - "type": "text", - "index": False - }, - "pubmed": { - "type": "long", - "index": False + "type": "keyword", + "normalizer": "keyword_lowercase_normalizer", }, + "pubmed": {"type": "long", "index": False}, "category": { - "type": "text", - "index": False - } - } + "type": "keyword", + "normalizer": "keyword_lowercase_normalizer", + }, + }, }, "BP": { "dynamic": False, @@ -76,24 +72,21 @@ def get_mapping(klass): }, "id": { "type": "keyword", - "normalizer" : "keyword_lowercase_normalizer", - 'copy_to': ['all'], + "normalizer": "keyword_lowercase_normalizer", + "copy_to": ["all"], }, "evidence": { - "type": "text", - "index": False - }, - "pubmed": { - "type": "long", - "index": False + "type": "keyword", + "normalizer": "keyword_lowercase_normalizer", }, + "pubmed": {"type": "long", "index": False}, "category": { - "type": "text", - "index": False - } - } - } - } + "type": "keyword", + "normalizer": "keyword_lowercase_normalizer", + }, + }, + }, + }, } }