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This is resolved in #162. |
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BioMass requires users to manually install Graphviz for graph visualization but some packages derived from biomass, e.g., pasmpy, do not need it. Currently if we run
import biomass
without Graphviz, it will raise an ImportError.I would like to make this optional so that biomass-derived packages can be run without error even if Graphviz is not installed.
Ideas:
pygraphviz
andpyvis
from requirements.txt to extras_require in setup.pygraph.py
as follows:@formersbach
I would be grateful if you could give me comments on this. I have a branch working on this and if it's ok, I will send a PR.
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