1.8.1

Fixed typo in 'treatement' -> 'treatment'
Removed UniProtKB from Gene class ID prefix list
Changed contact email from Deepak->Sierra

1.8.0

BiolinkML->LinkML name change support

1.7.0

1.7.0

Updated identifiers to canonical forms
Added predicates for increase/decrease expression predicates, opposite of predicate, generalized
domain for treats and transcription/translation predicates
Domain/range changes for 'interacts with' predicate
Add owlstart enumerations for logical interpretations
Fixed part of the documentation bug for 'types' (linkml changes in progress), added environmental context
as another doc fix
Bump urllib to 1.26.3
Added last broad mappings from wikidata to the model

1.6.1

Corrected NCBIGene prefix (from NCBIGENE)
Reverted ontology taxon parent to named thing

1.6.0 release

• Corrected the exact mappings for CTD positive and negative correlation predicates
• Refined the modeling of ontology class as a mixin
• Removed slot_uri for 'subclass of' predicate
• Moved CTD:therapeutic from 'exacerbates' to 'ameliorates'
• Fixed range for category slot in the 'association' class
• Cleaned up prefixes for INO and HANCESTRO
• Removed commas in class and predicate names

1.5.0 release

• Fixed mapping for CTD
• Added catalyst qualifier slot
• Updated guidelines with examples
• Extended the model to represent spatiotemporal exposures, outcomes, and cohorts
• Added 'pathological process' class
• Predicates that are symmetric are defined explicitly
• Added a new 'activity' class
• Fixed mixin hierarchy of transcript and RNA products
• Extended the model to represent entities from MODs
• Reorganized the chemical substance hierarchy
• Added a class to represent siRNA
• Improved the organization of 'pathological process'
• Added more prefixes for various classes
• Changed category slot required for 'named thing' and optional for 'association'

1.4.0 release

• Added an enhanced Publication model
• Replaced biolink-model.owl with biolink-model.owl.ttl
• Differentiated mappings for classes into related, broad, narrow, close, and exact mappings
• Differentiated mappings for slots into related, broad, narrow, close, and exact mappings
• Fixed typos in class and slot definitions
• Fixed inconsistent domain and range constraints
• Added classes to represent food
• Fixed parent for relation enables
• Deprecate edge_label in favor of predicate
• Added missing prefixes
• Added guidelines to the documentation
• Tidied the representation and use of mixins
• Differentiated the mixin hierarchy from the class hierarchy
• Rearranged properties like id, name, type, description to a generic grouping entity class

1.3.9 release

• Added genomic entities and common properties for these entities
• Added mappings to GPI 2.0 specification
• Fixed prefixes for mappings in the model
• Fixed definition of interacts_with relation to be symmetric
• Added missing predicates referenced in associations
• Added entities and properties for representing sequence locations
• Added mappings from Monarch Initiative
• Added an inverse property of subclass_of
• Fixed description for edge_label and relation slots
• Added more mappings for different entities and relations
• Added chi_squared_statistic and p_value association slots
• Expanded the scope of correlated_with relation
• Added clarification to RDF mappings
• Fixed provided_by property to be multivalued
• Added enables relation

1.3.0 release

• association_id property should be an association property
• Added or updated id_prefixes for many types
• add caused by property as inverse of causes
• Chemical structure --> chemical substance
• adding has-output
• OBAN to all upper case. Fix Issue #271
• Adding RHEA to prefixes that can be used for reactions, #269
• First pass at chem2chem associations and hyperedges to catalysts,
• fixes #269
• adding node properties for exposure events
• added new associations for exposures
• identifier type changed to anyURI and linked to metamodel ElementIdentifier
• iri type changed to support both URI or Curie
• changed subclass of to reference an iri instead of a defined ontology class, and made it multivalued
• association_id now defaults to bnode so it doesn't have to be supplied
• range of association slot is named thing (meaning that it has to be typed in the model)
• systematic synonym changed to multivalued
• changed subject and object of association to named thing instead of just a iri
• changed relation type to uriorcurie vs. straight uri
• moved association_id in the association class so the creation order is subject, relation, object instead of association_id, subject, relation, object

1.2.0 release

Merge pull request #234 from deepakunni3/prepare-for-pypi-release

Prepare for pypi release