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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "biolink-model"
version = "0.0.0"
description = "The Biolink Model is a high-level data model designed to standardize types and relationships in biological knowledgebases."
authors = ["Chris Mungall <[email protected]>", "Deepak Unni <[email protected]>","Sierra Moxon <[email protected]>", "Richard Bruskiewich <[email protected]>"]
license = "MIT"
readme = "README.md"
include = ["README.md", "src/biolink_model/schema", "project", "src/biolink_model/datamodel", "src/biolink_model/scripts"]
[tool.poetry.scripts]
generate_viz_json = "src.biolink_model.scripts.generate_json:generate_viz_json"
[tool.poetry.dependencies]
python = "^3.9"
curies = "^0.7.4"
prefixmaps = "^0.2.3"
pyyaml = "^6.0.1"
stringcase = "^1.2.0"
pytest = "^8.1.1"
beautifulsoup4 = ">=4.0.0"
yamllint = "^1.35.1"
path = "^17.0.0"
linkml-runtime = "^1.8.3"
[tool.poetry-dynamic-versioning]
enable = true
vcs = "git"
style = "pep440"
[tool.poetry.dev-dependencies]
linkml = ">=1.6.3"
mkdocs = "^1.4.2"
mkdocs-material = "^9.5.17"
mkdocs-mermaid2-plugin = "^1.1.1"
schemasheets = "^0.2.1"
codespell = "^2.2.6"
[build-system]
requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"]
build-backend = "poetry_dynamic_versioning.backend"
[tool.poetry.extras]
docs = ["mkdocs-material"]
[tool.codespell]
skip = '.idea,.git,SEMMEDDB*,semmed*,*.svg,docs'
ignore-words-list = 'amination,ehr,mor,brite,nin,mirgate'