DESCRIPTION

Package: askoR
Title: askoR - Differential Expresion Analysis using edgeR
Version: 1.0.0
Author: Fabrice Legeai, Kévin Gazengel, Susete Alves Carvalho
Maintainer: Fabrice Legeai <fabrice.legeai@inrae.fr>, Kévin Gazengel <kevin.gazengel@inrae.fr>, Susete Alves Carvalho <susete.alves-carvalho@inrae.fr>
Description: AskoR is a pipeline for the analysis of gene expression data, using edgeR. 
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
    topGO,
    goSTAG,
    edgeR,
    limma
Imports:
    ggfortify,
    ggrepel,
    gplots,
    ggplot2,
    VennDiagram,
    RColorBrewer,
    UpSetR,
    grid,
    Rgraphviz,
    stringr,
    optparse,
    Glimma,
    ComplexHeatmap,
    circlize,
    coseq
Suggests: 
    futile.logger,
    methods,
    graph,
    stats,
    knitr,
    rmarkdown,
    BiocStyle
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
biocViews:
    RNASeq,
    Transcriptomics,
    GeneExpression,
    DifferentialExpression,
    GeneSetEnrichment,
    Normalization, 
    MultipleComparison,
    FunctionalGenomics,
    Clustering