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alexkychen/assignPOP
GenepopFormat

Hello, It s not an issue, but I have a comprehension problem. In a genepop file, -1 corresponds to Nocalling ; 0 for AA ; 1 for AB ; 2 for BB And this, for each biallelic locus But in your example, we ...
  • EmilioEgal
  • Opened 
    on Nov 15, 2023
  • #24

alexkychen/assignPOP
Error running subset of individuals/loci (assign.matrix)

Hi and thanks for the great software, Everything has been working well so far (thanks for the documentation!), however, I m getting an error when I run assign.matrix with for specific proportions of loci/individuals. ...
  • quinn-ca
  • Opened 
    on Aug 30, 2023
  • #23

alexkychen/assignPOP
arguments imply differing number of rows

Hi Alex, I m having a similar issue to #13, except with assign.MC. I can run assign.X with the same data frame and it does not error out, but when I try to run assign.MC it gives me this: /Error in { ...
  • kwojtusik
  • 2
  • Opened 
    on May 10, 2023
  • #22

alexkychen/assignPOP
Loci order in baseline and test data

Hello assignPOP team, first of all thanks for this amazing tool. I just have a quick question: do the order of the loci needs to be the same on the baseline and test data? Thanks again and I am looking ...
  • kikecelemin
  • 1
  • Opened 
    on Apr 24, 2023
  • #21

alexkychen/assignPOP
Could not find function "read.Genpop"

Hi Alex, I m using package ‘assignPOP’ version 1.2.2. I can t import my genepop file into R using genin - read.genpop( simGenepop.txt , pop.names=c( pop_A , pop_B , pop_C ) ) I just want to ask if anyone ...
  • Nga-Vu-JCU
  • 2
  • Opened 
    on Jul 14, 2021
  • #20

alexkychen/assignPOP
Data conversion

Hi there, I have genind and tried using genind2genpop, converting the file into a formal class genepop . However, when trying running assign.MC it gives me the error this S4 class is not subsettable . ...
  • jcberny
  • 2
  • Opened 
    on Apr 29, 2021
  • #19

alexkychen/assignPOP
Error in makePSOCKcluster(names = spec, ...) : Cluster setup failed. 1 worker of 1 failed to connect.

Hi, I am getting the same error message when using assign.MC() and assign.kfold(): assign.MC(GENEPOP391ind_3_realpop_imputed, train.inds=c(0.5), train.loci=c(0.001, 0.005, 0.05, 0.1, 0.25, 0.5, 1), ...
  • PeiwenLi
  • 1
  • Opened 
    on Mar 3, 2021
  • #18

alexkychen/assignPOP
non-genomic data column selection error

  • albnd
  • Opened 
    on Mar 3, 2021
  • #17

alexkychen/assignPOP
Problem with read.Structure for fixed SNP loci

Hi, I have noticed a problem with the function read.Structure, which doubled the number of row of the DataMatrix (YOUR_LIST_NAME$DataMatrix) compared to the number of individuals (as in YOUR_LIST_NAME$SampleID). ...
  • biodray
  • 2
  • Opened 
    on Jan 29, 2021
  • #16

alexkychen/assignPOP
R version compatibility

Hi all, R has recently released its new version 4.0. Due to its change, assignPOP version 1.1.9 and earlier are not fully compatible with R 4.0. Specifically, it will result in errors when performing ...
ANNOUNCEMENT
  • alexkychen
  • Opened 
    on Jul 27, 2020
  • #15
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