diff --git a/R/single_gene_gen_fig.R b/R/single_gene_gen_fig.R index b41ecd9..b99c5cb 100644 --- a/R/single_gene_gen_fig.R +++ b/R/single_gene_gen_fig.R @@ -9,7 +9,7 @@ GenFigSingleGene = function(arg1){ ,nrow=2, ncol=1, labels=c("A", "B")), - bottom = text_grob("Plot produced using the MitoNuclearCOEXPlorer tool [https://snca.atica.um.es/MitoNuclearCOEXPlorer/]", color = "black", + bottom = text_grob("Plot produced using the MitoNuclearCOEXPlorer tool [https://ainefairbrotherbrowne.shinyapps.io/MitoNuclearCOEXPlorer/]", color = "black", hjust = 1, x = 1, face = "italic", size = 10))) } diff --git a/R/test_list_for_enrichment_fn.R b/R/test_list_for_enrichment_fn.R index 8657430..65523db 100644 --- a/R/test_list_for_enrichment_fn.R +++ b/R/test_list_for_enrichment_fn.R @@ -229,7 +229,7 @@ test_list_for_enrichment = function(gene_list, iters, filt_bkg_for_protein_codin time.taken = end.time - start.time print(paste("Runtime =", time.taken)) return(ggpubr::annotate_figure(fig, - bottom = text_grob("Analysis and visualisation provided by the MitoNuclearCOEXPlorer tool [https://snca.atica.um.es/MitoNuclearCOEXPlorer/]", color = "black", + bottom = text_grob("Analysis and visualisation provided by the MitoNuclearCOEXPlorer tool [https://ainefairbrotherbrowne.shinyapps.io/MitoNuclearCOEXPlorer/]", color = "black", hjust = 1, x = 1, face = "italic", size = 10))) }else{ diff --git a/app.R b/app.R index d4396a2..5245c00 100644 --- a/app.R +++ b/app.R @@ -411,7 +411,8 @@ shinyApp( paste("MitoNuclearCOEXPlorer_correlations_12_CNS_regions","csv",sep=".") }, content = function(con){ - file.copy('./data/GTEx_brain_summary_table.csv', con) + write.csv(summary_brain, con) + }) output$downloadCTRL <- downloadHandler( @@ -419,7 +420,7 @@ shinyApp( paste("MitoNuclearCOEXPlorer_correlations_heart_and_muscle","csv",sep=".") }, content = function(con){ - file.copy('./data/GTEx_control_tissues_summary_table.csv', con) + write.csv(summary_controls, con) }) output$downloadSINGLEGENE <- downloadHandler(