DESCRIPTION

Package: palmid
Title: Viral RNA Dependent RNA Polymerase Analysis Suite
Description: R Analysis suite for viral RNA dependent RNA polymerase (RdRP). 
    Statistical and meta-data analysis of 'palmscan' output and 'palmDB'/
    'DIAMOND' alignment files. Cross reference an input RNA virus against
    145,000 RdRP identified in the Serratus project.
    Non-CRAN dependency is ggmsa (https://github.com/YuLab-SMU/ggmsa) which
    is available on Bioconductor.
Version: 0.0.6
Authors@R: c( 
  person("Artem", "Babaian", , "artem@rRNA.ca", role = c("aut", "cre"),
    comment = c(ORCID = "0000-0002-4315-6262")),
  person("Hannah", "Le", , "hannah.lgbhan@gmail.com", role = "aut")
    )
URL: https://serratus.io/palmid
BugReports: https://github.com/ababaian/palmid/issues
License: AGPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Suggests:
    sf,
    rnaturalearth,
    rnaturalearthdata
Imports:
    Biostrings,
    DBI,
    dbplyr,
    downloadthis,
    DT,
    ggExtra,
    ggmsa,
    ggplotify,
    ggtree,
    ggwordcloud,
    grDevices,
    gridExtra (>= 2.3),
    htmltools,
    htmlwidgets,
    leaflet,
    methods,
    plotly,
    rmarkdown,
    RPostgreSQL,
    scales,
    stats,
    treeio,
    utils,
    viridisLite
Depends:
    dplyr,
    ggplot2 (>= 3.3.3)
Remotes:
    bioc::release/ggtree,
    bioc::release/ggmsa