diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 38b21a4b2..e40427abc 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "b45878f3df6dffef908d7ec87e98124988d559f6" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 7e11ea98b..6ba2ba82b 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "a0a3ca6aa1eb54296a719c0190365d414d855bc0" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 0485ee814..d92b7b620 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "e25051313213ab9b94363dd6ade21d1145ab1ba1" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -255,15 +274,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -283,9 +306,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -355,11 +378,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -459,15 +487,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -506,9 +535,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -555,10 +584,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -589,9 +618,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -747,6 +776,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -765,9 +799,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -801,9 +835,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -825,9 +859,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -854,16 +888,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -883,9 +923,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -901,6 +941,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -926,12 +972,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -940,7 +986,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1011,11 +1057,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1025,6 +1072,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1056,15 +1104,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1086,9 +1134,9 @@ version = "0.5.4" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MLLabelUtils]] deps = ["LearnBase", "MappedArrays", "StatsBase"] @@ -1112,10 +1160,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1204,9 +1252,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1238,9 +1286,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1272,15 +1320,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1349,10 +1397,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1372,9 +1426,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1382,6 +1436,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" @@ -1449,9 +1513,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1496,9 +1560,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1523,18 +1587,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1542,9 +1611,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1553,15 +1622,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1597,14 +1666,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1633,10 +1708,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1745,9 +1820,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1782,25 +1857,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1829,9 +1907,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1861,9 +1939,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1924,9 +2002,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1947,9 +2025,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2108,9 +2186,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2120,9 +2198,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2186,7 +2264,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index 57e2e897d..1e408d224 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "7168816b9d483eadc3c00203d16ab269e5dc5bfd" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -98,9 +117,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -190,9 +209,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -219,15 +238,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -241,9 +264,9 @@ weakdeps = ["InverseFunctions"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -313,11 +336,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -406,15 +434,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -453,9 +482,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -502,10 +531,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -536,9 +565,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -632,9 +661,9 @@ version = "3.3.8+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" +git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "9.0.0" +version = "9.1.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -697,9 +726,9 @@ version = "0.3.23" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" +git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" +version = "0.4.11" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -712,6 +741,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -730,9 +764,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -766,9 +800,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -796,9 +830,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -825,16 +859,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -854,9 +894,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -872,6 +912,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -891,12 +937,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -905,7 +951,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -976,11 +1022,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -990,6 +1037,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1021,15 +1069,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1039,9 +1087,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1070,10 +1118,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1185,9 +1233,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1219,15 +1267,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1295,10 +1343,16 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1318,9 +1372,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1328,6 +1382,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1383,9 +1447,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1436,9 +1500,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1463,18 +1527,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1482,9 +1551,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1493,9 +1562,9 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1537,14 +1606,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1573,10 +1648,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1661,9 +1736,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1688,25 +1763,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1735,9 +1813,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1767,9 +1845,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1818,9 +1896,9 @@ version = "1.25.0+0" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1836,9 +1914,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1997,9 +2075,9 @@ version = "1.5.5+0" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "16848c23e7961e099a4152ba0d10db887f412ee9" +git-tree-sha1 = "5ded212acd815612df112bb895ef3910c5a03f57" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" +version = "0.6.67" [deps.Zygote.extensions] ZygoteColorsExt = "Colors" @@ -2013,9 +2091,9 @@ version = "0.6.65" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2025,9 +2103,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2091,7 +2169,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index be8f1d5cc..e21f0b305 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "22534c8a743be6cd79b588fb185e78dd8614a6d2" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index c72f859f0..5d9c7015c 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "9182614b755dc32fb5fc91ef98f1dbba04d8ffaf" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -255,15 +274,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -283,9 +306,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -355,11 +378,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -465,15 +493,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -512,9 +541,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -561,10 +590,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -607,9 +636,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -765,6 +794,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -783,9 +817,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -819,9 +853,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -849,9 +883,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -878,16 +912,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -907,9 +947,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -925,6 +965,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -944,12 +990,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -958,7 +1004,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1029,11 +1075,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1043,6 +1090,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1074,15 +1122,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1092,9 +1140,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1123,10 +1171,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1221,9 +1269,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1255,9 +1303,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1289,15 +1337,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1371,10 +1419,16 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1394,9 +1448,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1404,6 +1458,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" @@ -1471,9 +1535,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1518,9 +1582,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1545,18 +1609,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1564,9 +1633,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1575,15 +1644,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1630,14 +1699,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1666,10 +1741,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1778,9 +1853,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1815,25 +1890,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1862,9 +1940,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1894,9 +1972,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1957,9 +2035,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1980,9 +2058,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2141,9 +2219,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2153,9 +2231,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2219,7 +2297,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index a3650ad1f..f0765b651 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "22d77437d5f9cc37590eb650c66a832d7f8185cb" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -98,9 +117,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -190,9 +209,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -219,15 +238,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -241,9 +264,9 @@ weakdeps = ["InverseFunctions"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -313,11 +336,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -400,15 +428,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -447,9 +476,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -496,10 +525,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -518,9 +547,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -664,6 +693,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -682,9 +716,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -718,9 +752,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -742,9 +776,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -771,16 +805,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,9 +840,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -818,6 +858,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -837,12 +883,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -851,7 +897,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -922,11 +968,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -936,6 +983,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -967,15 +1015,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -985,9 +1033,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1005,10 +1053,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1108,9 +1156,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1142,15 +1190,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1213,10 +1261,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1236,9 +1290,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1246,6 +1300,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1301,9 +1365,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1348,9 +1412,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1375,18 +1439,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1394,9 +1463,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1405,9 +1474,9 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1438,14 +1507,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1474,10 +1549,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1562,9 +1637,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1589,25 +1664,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1636,9 +1714,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1668,9 +1746,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1719,9 +1797,9 @@ version = "1.25.0+0" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1737,9 +1815,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1898,9 +1976,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1910,9 +1988,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1976,7 +2054,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 4c986bc0a..491aa7acb 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "0517af877736a403423fea5e79af9a2622617f81" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -255,15 +274,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -283,9 +306,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -355,11 +378,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -459,15 +487,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -506,9 +535,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -555,10 +584,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -589,9 +618,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -747,6 +776,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -765,9 +799,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -801,9 +835,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -825,9 +859,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -854,16 +888,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -883,9 +923,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -901,6 +941,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -926,12 +972,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -940,7 +986,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1011,11 +1057,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1025,6 +1072,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1056,15 +1104,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1086,9 +1134,9 @@ version = "0.5.4" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MLLabelUtils]] deps = ["LearnBase", "MappedArrays", "StatsBase"] @@ -1112,10 +1160,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1204,9 +1252,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1238,9 +1286,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1272,15 +1320,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1349,10 +1397,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1372,9 +1426,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1382,6 +1436,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" @@ -1449,9 +1513,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1496,9 +1560,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1523,18 +1587,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1542,9 +1611,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1553,15 +1622,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1597,14 +1666,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1633,10 +1708,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1745,9 +1820,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1782,25 +1857,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1829,9 +1907,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1861,9 +1939,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1924,9 +2002,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1947,9 +2025,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2108,9 +2186,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2120,9 +2198,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2186,7 +2264,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index c55a16b30..53cd8263c 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "53f714f9c520703858bde7881fd306675a4a29d7" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -255,15 +274,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -283,9 +306,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -355,11 +378,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -459,15 +487,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -506,9 +535,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -555,10 +584,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -589,9 +618,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -741,6 +770,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -759,9 +793,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -795,9 +829,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -819,9 +853,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -848,16 +882,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -877,9 +917,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -895,6 +935,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -920,12 +966,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -934,7 +980,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1005,11 +1051,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1019,6 +1066,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1050,15 +1098,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1080,9 +1128,9 @@ version = "0.5.4" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MLLabelUtils]] deps = ["LearnBase", "MappedArrays", "StatsBase"] @@ -1106,10 +1154,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1198,9 +1246,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1232,9 +1280,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1266,15 +1314,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1343,10 +1391,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1366,9 +1420,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1376,6 +1430,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" @@ -1443,9 +1507,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1490,9 +1554,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1517,18 +1581,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1536,9 +1605,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1547,15 +1616,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1586,14 +1655,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1622,10 +1697,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1728,9 +1803,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1765,25 +1840,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1812,9 +1890,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1844,9 +1922,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1907,9 +1985,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1930,9 +2008,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2091,9 +2169,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2103,9 +2181,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2169,7 +2247,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index a8831e57e..54511e7f1 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "a797d593ed4ed55905ba6ad67df963533cfbc8d6" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -255,15 +274,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -283,9 +306,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -348,9 +371,9 @@ version = "1.0.5+0" [[deps.ComponentArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "3ee12062466a73b5f9c04113375e4934f174bc2c" +git-tree-sha1 = "d30eb4d89c791a64e698546c1e0e0e488cd99da5" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.3" +version = "0.15.5" [deps.ComponentArrays.extensions] ComponentArraysAdaptExt = "Adapt" @@ -381,11 +404,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -491,15 +519,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -538,9 +567,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -587,10 +616,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -633,9 +662,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -735,9 +764,9 @@ version = "1.9.0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" +git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "9.0.0" +version = "9.1.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -800,9 +829,9 @@ version = "0.3.23" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" +git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" +version = "0.4.11" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -826,6 +855,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -844,9 +878,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -880,9 +914,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -910,9 +944,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -939,16 +973,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -968,9 +1008,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -986,6 +1026,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -1005,12 +1051,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -1019,7 +1065,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1090,11 +1136,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1104,6 +1151,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1135,15 +1183,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1153,9 +1201,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1184,10 +1232,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1282,9 +1330,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1322,9 +1370,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1356,9 +1404,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1368,9 +1416,9 @@ weakdeps = ["Requires", "TOML"] [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1444,10 +1492,16 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1467,9 +1521,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1477,6 +1531,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" @@ -1544,9 +1608,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1591,9 +1655,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1618,18 +1682,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1637,9 +1706,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1648,15 +1717,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1703,14 +1772,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1756,10 +1831,10 @@ weakdeps = ["OffsetArrays", "StaticArrays"] StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1868,9 +1943,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1905,25 +1980,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1952,9 +2030,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1989,9 +2067,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2052,9 +2130,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -2075,9 +2153,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2236,9 +2314,9 @@ version = "1.5.5+0" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "16848c23e7961e099a4152ba0d10db887f412ee9" +git-tree-sha1 = "5ded212acd815612df112bb895ef3910c5a03f57" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" +version = "0.6.67" weakdeps = ["Colors", "Distances", "Tracker"] [deps.Zygote.extensions] @@ -2248,9 +2326,9 @@ weakdeps = ["Colors", "Distances", "Tracker"] [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2260,9 +2338,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2326,7 +2404,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index e7a19a6fd..448549468 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "1cf8b95959ac0235940751347a1e8ff1481cfa25" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -116,9 +135,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -136,11 +155,15 @@ version = "7.4.11" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" +[[deps.ArrayLayouts]] +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee" +uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" +version = "1.4.3" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -163,6 +186,16 @@ git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.7" +[[deps.BandedMatrices]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] +git-tree-sha1 = "e63330a7d2dcc6245514d9035f4fab798ea6ca74" +uuid = "aae01518-5342-5314-be14-df237901396f" +version = "1.2.0" +weakdeps = ["SparseArrays"] + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" + [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" @@ -214,9 +247,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] @@ -225,16 +258,18 @@ uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.5" [[deps.BoundaryValueDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NonlinearSolve", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "TruncatedStacktraces", "UnPack"] -git-tree-sha1 = "de4f02f54b760a6a68b7fb57185275266c09beca" +deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "Tricks", "TruncatedStacktraces", "UnPack"] +git-tree-sha1 = "8a19e2457da8a7e5ae54ee9479885738d8fd926b" uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "5.1.0" +version = "5.4.0" [deps.BoundaryValueDiffEq.extensions] BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" + BoundaryValueDiffEqOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.BoundaryValueDiffEq.weakdeps] ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -272,15 +307,19 @@ version = "0.3.12" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -306,9 +345,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -385,9 +424,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -466,14 +505,15 @@ uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" version = "0.4.0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "95b6df71e218379a831874215b0effaac791d7d7" +deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "35dadcc236b38661368d5a9d5e2dfabeee112c54" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.133.1" +version = "6.140.1" [deps.DiffEqBase.extensions] + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" - DiffEqBaseEnzymeExt = "Enzyme" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -481,9 +521,9 @@ version = "6.133.1" DiffEqBaseReverseDiffExt = "ReverseDiff" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" - DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" @@ -493,13 +533,12 @@ version = "6.133.1" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "acc53f895588767cbb296d3d8581ebd203524a2e" +git-tree-sha1 = "4e4de57a0ac47b2f20aae62f132355b058e9f0cd" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.33.0" +version = "2.34.0" weakdeps = ["OrdinaryDiffEq", "Sundials"] [[deps.DiffEqNoiseProcess]] @@ -546,15 +585,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -593,9 +633,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -603,9 +643,9 @@ weakdeps = ["MCMCChains"] [[deps.EllipsisNotation]] deps = ["StaticArrayInterface"] -git-tree-sha1 = "d89f0d98f6296a08b73fdfed559f8e86f871cc06" +git-tree-sha1 = "3507300d4343e8e4ad080ad24e335274c2e297a9" uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949" -version = "1.7.0" +version = "1.8.0" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] @@ -620,21 +660,21 @@ version = "1.0.4" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Preferences", "Printf", "Random"] -git-tree-sha1 = "a8a13f3259f59f1738e14296b9191299226ea6b6" +git-tree-sha1 = "821daa883570994b4c0f9994de2840cc506a51f3" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.11.9" +version = "0.11.10" [[deps.EnzymeCore]] deps = ["Adapt"] -git-tree-sha1 = "d8701002a745c450c03b890f10d53636d1a8a7ea" +git-tree-sha1 = "ab81396e4e7b61f5590db02fa1c17fae4f16d7ab" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.2" +version = "0.6.3" [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "6febd718de952cb31717a34f81f98872c065e825" +git-tree-sha1 = "e248a990a4a917e587c6b7fcf64a4311649a267f" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.88+0" +version = "0.0.89+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -672,10 +712,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -691,9 +731,9 @@ version = "3.3.10+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "9d77cb1caf03e67514ba60bcfc47c6e131b1950c" +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.7" +version = "0.2.8" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -711,9 +751,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -811,9 +851,9 @@ version = "3.3.8+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" +git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "9.0.0" +version = "9.1.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -900,9 +940,9 @@ version = "0.3.23" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" +git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" +version = "0.4.11" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -925,6 +965,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -943,9 +988,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -979,9 +1024,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -1019,9 +1064,9 @@ version = "0.4.1" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -1052,16 +1097,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1081,9 +1132,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -1099,11 +1150,17 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.14" +version = "0.1.15" [[deps.Lazy]] deps = ["MacroTools"] @@ -1130,12 +1187,12 @@ version = "1.0.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -1144,7 +1201,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1214,32 +1271,38 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "UnPack"] +git-tree-sha1 = "051943b8b8e81c548e9d099d6eb3d3ed23093c35" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.9.2" +version = "2.20.0" [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveEnzymeExt = "Enzyme" + LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" [[deps.LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random"] @@ -1249,11 +1312,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1263,6 +1327,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1293,10 +1358,10 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.165" +version = "0.12.166" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -1305,15 +1370,15 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1323,9 +1388,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1348,10 +1413,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1451,10 +1516,20 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "a5f1f836da05d513c4143576af8f5d8e51b759f5" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "25baacdcae7d8a981fd1d3d8f79c2cd2f8658332" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "2.2.1" +version = "2.8.1" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" [[deps.ObjectFile]] deps = ["Reexport", "StructIO"] @@ -1463,9 +1538,9 @@ uuid = "d8793406-e978-5875-9003-1fc021f44a92" version = "0.4.1" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1497,9 +1572,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1532,9 +1607,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76" +git-tree-sha1 = "42d0b4515472a25a3b47be228c03ec842bdc9d49" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.58.0" +version = "6.59.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1543,9 +1618,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1561,9 +1636,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1621,9 +1696,9 @@ version = "0.4.4" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.8" +version = "0.7.9" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1660,10 +1735,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1683,9 +1764,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1693,6 +1774,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1748,9 +1839,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1766,9 +1857,9 @@ version = "2.39.0" [[deps.RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "2b6d4a40339aa02655b1743f4cd7c03109f520c1" +git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.20" +version = "0.2.21" [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1813,9 +1904,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1846,23 +1937,28 @@ version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "4b8586aece42bee682399c4c4aee95446aa5cd19" +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.39" +version = "0.6.42" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1876,15 +1972,15 @@ version = "0.1.9" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.SciMLSensitivity]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseDiffTools", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote", "ZygoteRules"] -git-tree-sha1 = "7cb3262a1a457e35e650cefee81a1c2fba0de814" +deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseDiffTools", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote", "ZygoteRules"] +git-tree-sha1 = "014a537ef9d5758f199d19fb66642e26563233dd" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.41.1" +version = "7.47.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1893,15 +1989,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1928,10 +2024,10 @@ uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" [[deps.SimpleNonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "4d53b83af904049c493daaf2a225bcae994a3c59" +deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "69b1a53374dd14d7c165d98cb646aeb5f36f8d07" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.20" +version = "0.1.25" weakdeps = ["NNlib"] [deps.SimpleNonlinearSolve.extensions] @@ -1948,20 +2044,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" -[[deps.SnoopPrecompile]] -deps = ["Preferences"] -git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.3" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1969,9 +2065,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" +git-tree-sha1 = "07272c80c278947baca092df0a01da4a10622ad5" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.8.0" +version = "2.13.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -2029,10 +2125,10 @@ weakdeps = ["OffsetArrays", "StaticArrays"] StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -2091,15 +2187,15 @@ version = "1.16.1" [[deps.StochasticDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "2a1818923476d496190791b4cf7183e9ccf64a99" +git-tree-sha1 = "7a71f1e67cbcfcd5387707e6621431d1afff62a9" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.63.0" +version = "6.63.2" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" +git-tree-sha1 = "e7dd250422df290cee14960c1ee144b44ac3dd77" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.17" +version = "0.5.1" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -2130,9 +2226,9 @@ version = "5.10.1+6" [[deps.Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "b208d5379feee6c1c9f9660e4294e77e40946884" +git-tree-sha1 = "71dc65a2d7decdde5500299c9b04309e0138d1b4" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.20.0" +version = "4.20.1" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] @@ -2165,9 +2261,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2204,25 +2300,28 @@ version = "0.5.23" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -2246,9 +2345,9 @@ version = "0.3.0" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" +version = "0.1.20" [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" @@ -2263,9 +2362,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -2300,9 +2399,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2369,9 +2468,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -2387,9 +2486,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2548,9 +2647,9 @@ version = "1.5.5+0" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "16848c23e7961e099a4152ba0d10db887f412ee9" +git-tree-sha1 = "5ded212acd815612df112bb895ef3910c5a03f57" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" +version = "0.6.67" weakdeps = ["Colors", "Distances", "Tracker"] [deps.Zygote.extensions] @@ -2560,9 +2659,9 @@ weakdeps = ["Colors", "Distances", "Tracker"] [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2572,9 +2671,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2638,7 +2737,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index 54d4e80e3..dbb2c14b1 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "ef462fc173a4ba83c350dd73690f805ff0c2abe7" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -435,15 +463,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -482,9 +511,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -531,10 +560,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -553,9 +582,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -705,6 +734,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -723,9 +757,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -759,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -783,9 +817,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -812,16 +846,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -841,9 +881,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -859,6 +899,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -878,12 +924,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -892,7 +938,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -963,11 +1009,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -977,6 +1024,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1008,15 +1056,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1026,9 +1074,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1046,10 +1094,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1132,9 +1180,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1166,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1200,15 +1248,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1277,10 +1325,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1300,9 +1354,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1310,6 +1364,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1365,9 +1429,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1418,9 +1482,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1445,18 +1509,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1464,9 +1533,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1475,15 +1544,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1514,14 +1583,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1550,10 +1625,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1650,9 +1725,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1677,25 +1752,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1724,9 +1802,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1756,9 +1834,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1813,9 +1891,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1831,9 +1909,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1992,9 +2070,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2004,9 +2082,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2070,7 +2148,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml index 808b6738f..0c7c34072 100644 --- a/tutorials/12-gplvm/Manifest.toml +++ b/tutorials/12-gplvm/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "390f0ff830d7e11242f044c4b0d23eedcbb7a091" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -43,11 +43,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -104,9 +123,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -196,9 +215,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -249,15 +268,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -271,9 +294,9 @@ weakdeps = ["InverseFunctions"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -343,11 +366,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -447,15 +475,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -494,9 +523,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -543,10 +572,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -577,9 +606,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -729,6 +758,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -747,9 +781,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -783,9 +817,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -807,9 +841,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -825,9 +859,9 @@ version = "0.6.7" [[deps.KernelFunctions]] deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] -git-tree-sha1 = "d1e34d1ae87ac280a0cfca85ea3d610f25ea6a5f" +git-tree-sha1 = "c7f8315aa2e47be568be868bf6892e853bc7f1e1" uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" -version = "0.10.57" +version = "0.10.58" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -842,16 +876,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -871,9 +911,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -889,6 +929,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -908,12 +954,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -922,7 +968,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -993,11 +1039,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1007,6 +1054,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1038,15 +1086,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1056,9 +1104,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1076,10 +1124,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1185,9 +1233,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1219,15 +1267,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1296,10 +1344,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1319,9 +1373,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1329,6 +1383,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" @@ -1396,9 +1460,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1449,9 +1513,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1476,18 +1540,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1495,9 +1564,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1506,15 +1575,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1545,14 +1614,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1581,10 +1656,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1675,9 +1750,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1712,25 +1787,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1759,9 +1837,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1791,9 +1869,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1848,9 +1926,9 @@ version = "1.4.2" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1871,9 +1949,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2032,9 +2110,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2044,9 +2122,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2110,7 +2188,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 03b27bc5a..e795fc3a8 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "8465c369abb7f6ef05a55c9b93c53a6097762489" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index 9868d2594..3e7d25421 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "31266805170f7b1d6aa8609e6114be070df1b249" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -98,9 +117,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,15 +221,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -262,6 +285,11 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" @@ -338,15 +366,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -385,9 +414,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -426,9 +455,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -495,6 +524,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -513,9 +547,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -555,9 +589,9 @@ version = "1.5.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -572,16 +606,22 @@ uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.7" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LRUCache]] git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" @@ -589,9 +629,15 @@ uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" version = "1.5.0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" + +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" [[deps.Lazy]] deps = ["MacroTools"] @@ -612,12 +658,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -626,7 +672,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -649,11 +695,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -663,6 +710,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -694,15 +742,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -712,9 +760,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -829,9 +877,9 @@ version = "1.6.2" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] @@ -851,10 +899,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -878,6 +932,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -929,9 +993,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -970,9 +1034,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -997,18 +1061,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1016,9 +1085,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1043,14 +1112,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1079,10 +1154,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1167,9 +1242,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1188,9 +1263,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] @@ -1198,9 +1273,9 @@ weakdeps = ["PDMats"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1229,9 +1304,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1261,9 +1336,9 @@ version = "0.1.3" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -1272,9 +1347,9 @@ version = "1.2.13+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -1284,7 +1359,7 @@ version = "5.8.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml index 4beb82d5d..d93d5153a 100644 --- a/tutorials/15-gaussian-processes/Manifest.toml +++ b/tutorials/15-gaussian-processes/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "6b58e2d02b44e64312fc865e24484ed638995104" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -43,11 +43,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -104,9 +123,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -196,9 +215,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,9 +276,9 @@ weakdeps = ["InverseFunctions"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -325,11 +348,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -435,15 +463,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -482,9 +511,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -531,10 +560,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -559,9 +588,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -711,6 +740,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -729,9 +763,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -765,9 +799,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -789,9 +823,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -807,9 +841,9 @@ version = "0.6.7" [[deps.KernelFunctions]] deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] -git-tree-sha1 = "d1e34d1ae87ac280a0cfca85ea3d610f25ea6a5f" +git-tree-sha1 = "c7f8315aa2e47be568be868bf6892e853bc7f1e1" uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" -version = "0.10.57" +version = "0.10.58" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -824,16 +858,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -853,9 +893,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -871,6 +911,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -890,12 +936,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -904,7 +950,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -975,11 +1021,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -989,6 +1036,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1020,15 +1068,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1038,9 +1086,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1058,10 +1106,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1161,9 +1209,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1195,15 +1243,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1272,10 +1320,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1295,9 +1349,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1305,6 +1359,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1360,9 +1424,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1413,9 +1477,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1440,18 +1504,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1459,9 +1528,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1470,15 +1539,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1509,14 +1578,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1545,10 +1620,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1633,9 +1708,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1660,25 +1735,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1707,9 +1785,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1739,9 +1817,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1796,9 +1874,9 @@ version = "1.4.2" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1819,9 +1897,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1980,9 +2058,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1992,9 +2070,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2058,7 +2136,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-01-contributing-guide/Manifest.toml b/tutorials/docs-01-contributing-guide/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-01-contributing-guide/Manifest.toml +++ b/tutorials/docs-01-contributing-guide/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-02-contributing-style-guide/Manifest.toml b/tutorials/docs-02-contributing-style-guide/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-02-contributing-style-guide/Manifest.toml +++ b/tutorials/docs-02-contributing-style-guide/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml index 7ac49d08b..dd321df09 100644 --- a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml +++ b/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "5d3b8b9eb7683443ea8ae96e6fef297715042a31" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-05-for-developers-compiler/Manifest.toml b/tutorials/docs-05-for-developers-compiler/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-05-for-developers-compiler/Manifest.toml +++ b/tutorials/docs-05-for-developers-compiler/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-06-for-developers-interface/Manifest.toml b/tutorials/docs-06-for-developers-interface/Manifest.toml index 0d130560a..7ed1f6b07 100644 --- a/tutorials/docs-06-for-developers-interface/Manifest.toml +++ b/tutorials/docs-06-for-developers-interface/Manifest.toml @@ -1,14 +1,9 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "c2c40f5436f7cfb3d611046e88c24da658e5bf55" -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" @@ -21,16 +16,10 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "63ae0647e8db221d63256820d1e346216c65ac66" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "5.0.0" [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -38,54 +27,16 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +deps = ["LinearAlgebra"] +git-tree-sha1 = "345a14764e43fe927d6f5c250fe4c8e4664e6ee8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" +version = "2.4.0" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["ArgCheck", "InplaceOps", "LinearAlgebra", "Parameters", "ProgressMeter", "Random", "Requires", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "34231e19ca94a2a86a0e82445454e7aa7d319b5b" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.2.24" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -97,10 +48,10 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" [[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +deps = ["Arpack_jll", "Libdl", "LinearAlgebra"] +git-tree-sha1 = "2ff92b71ba1747c5fdd541f8fc87736d82f40ec9" uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" +version = "0.4.0" [[deps.Arpack_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] @@ -108,37 +59,15 @@ git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.1+1" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +[[deps.ArrayInterfaceCore]] +deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" +uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" +version = "0.1.29" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" @@ -147,29 +76,15 @@ version = "1.0.1" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "d63ba0315a1d287c9467e61e932578f2fdd048e0" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.3.3" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] +git-tree-sha1 = "7fe6d92c4f281cf4ca6f2fba0ce7b299742da7ca" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" +version = "0.3.37" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -180,126 +95,68 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["Distributions", "ForwardDiff", "LinearAlgebra", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "StatsFuns", "Tracker"] +git-tree-sha1 = "0b7b2f292e770eb32e5e1966cc4b5c605a154022" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" 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-git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +deps = ["Dates", "Statistics"] +git-tree-sha1 = "4214b48a62eb8f2c292b2ee34a508c256c0cdbc9" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" +version = "0.3.2" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.0" -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - [[deps.IterTools]] git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" @@ -745,12 +428,6 @@ git-tree-sha1 = 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[[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,64 +473,22 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] 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[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" +deps = ["BinaryProvider", "Libdl", "Pkg"] +git-tree-sha1 = "3834b76e8dff6beef8ec8c39ec54b82ac9c25676" uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" +version = "0.3.4" -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] +git-tree-sha1 = "f27132e551e959b3667d8c93eae90973225032dd" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.1.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -949,42 +500,6 @@ git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" version = "2.1.1" -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -995,16 +510,10 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AxisArrays", "DataFrames", "Distributions", "KernelDensity", "LinearAlgebra", "Plots", "Random", "RecipesBase", "Serialization", "Showoff", "SpecialFunctions", "Statistics", "StatsBase"] +git-tree-sha1 = "54a33641c1be24a4d254b785f42b545c4b65253b" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.14" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1012,12 +521,6 @@ git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2023.2.0+0" -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - [[deps.MacroTools]] deps = ["Markdown", "Random"] git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" @@ -1025,20 +528,14 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.11" [[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +git-tree-sha1 = "e2a02fe7ee86a10c707ff1756ab1650b40b140bb" uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" +version = "0.2.2" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" @@ -1057,9 +554,9 @@ version = "0.1.4" [[deps.Missings]] deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" +git-tree-sha1 = "f8c673ccc215eb50fcadb285f522420e29e69e1c" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" +version = "0.4.5" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" @@ -1069,60 +566,43 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2022.10.11" [[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "352fae519b447bf52e6de627b89f448bcd469e4e" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" +version = "0.7.0" + +[[deps.NLSolversBase]] +deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.8.3" [[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +deps = ["BinaryProvider", "Libdl", "LinearAlgebra", "Requires", "Statistics"] +git-tree-sha1 = "d9f196d911f55aeaff11b11f681b135980783824" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" +version = "0.6.6" [[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +git-tree-sha1 = "b086b7ea07f8e38cf122f5016af580881ac914fe" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" +version = "0.3.7" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "8bc6180f328f3c0ea2663935db880d34c57d6eae" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.4" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +deps = ["Test"] +git-tree-sha1 = "dc02cec22747d1d10d9f70d8a1c03432b5bfbcd0" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.2.3" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1130,84 +610,39 @@ git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" version = "1.12.10" -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" version = "0.3.21+4" -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" +[[deps.Optim]] +deps = ["Calculus", "DiffEqDiffTools", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "Random", "SparseArrays", "StatsBase", "Test"] +git-tree-sha1 = "a626e09c1f7f019b8f3a30a8172c7b82d2f4810b" +uuid = "429524aa-4258-5aef-a3af-852621145aeb" +version = "0.18.1" [[deps.OrderedCollections]] git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.2" -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - [[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] +git-tree-sha1 = "2fc6f50ddd959e462f0a2dbc802ddf2a539c6e35" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.9.12" + +[[deps.Parameters]] +deps = ["Markdown", "OrderedCollections", "REPL", "Test"] +git-tree-sha1 = "70bdbfb2bceabb15345c0b54be4544813b3444e4" +uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" +version = "0.10.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" 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"Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +deps = ["Colors", "Dates", "Printf", "Random", "Reexport"] +git-tree-sha1 = "51e742162c97d35f714f9611619db6975e19384b" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "0.6.5" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", 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"35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "0.5.6" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.2.13+0" -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +[[deps.Zygote]] +deps = ["DiffRules", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "40aa7d4724b3ab508f6200a885b6e92cc6647f14" +uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "0.3.1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.2.4" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+0" -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml b/tutorials/docs-07-for-developers-variational-inference/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml +++ b/tutorials/docs-07-for-developers-variational-inference/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-08-using-turing/Manifest.toml b/tutorials/docs-08-using-turing/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-08-using-turing/Manifest.toml +++ b/tutorials/docs-08-using-turing/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-09-using-turing-advanced/Manifest.toml b/tutorials/docs-09-using-turing-advanced/Manifest.toml index ec051a138..a5d4cd88c 100644 --- a/tutorials/docs-09-using-turing-advanced/Manifest.toml +++ b/tutorials/docs-09-using-turing-advanced/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "4c0c886318004c9a56b597cb6e8faf8fe1ac07ac" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-10-using-turing-autodiff/Manifest.toml b/tutorials/docs-10-using-turing-autodiff/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-10-using-turing-autodiff/Manifest.toml +++ b/tutorials/docs-10-using-turing-autodiff/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml index 25fbf5198..0ae277062 100644 --- a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml +++ b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "f6bac772a1c0780a37a1f9e868095eea94af1f8e" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -482,9 +511,9 @@ version = "3.4.6" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -531,10 +560,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -553,9 +582,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -699,6 +728,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -717,9 +751,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -753,9 +787,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -777,9 +811,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -806,16 +840,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -835,9 +875,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -853,6 +893,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -878,12 +924,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -892,7 +938,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -963,11 +1009,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -977,6 +1024,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1008,15 +1056,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1026,9 +1074,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1046,10 +1094,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1132,9 +1180,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1166,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1200,15 +1248,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1271,10 +1319,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1294,9 +1348,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1304,6 +1358,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1359,9 +1423,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1406,9 +1470,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1433,18 +1497,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1452,9 +1521,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1463,15 +1532,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1502,14 +1571,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1538,10 +1613,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1644,9 +1719,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1677,25 +1752,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1735,9 +1813,9 @@ version = "1.4.3" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1767,9 +1845,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1824,9 +1902,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1842,9 +1920,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2003,9 +2081,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2015,9 +2093,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2081,7 +2159,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-12-using-turing-guide/Manifest.toml b/tutorials/docs-12-using-turing-guide/Manifest.toml index c71163593..bb99a0255 100644 --- a/tutorials/docs-12-using-turing-guide/Manifest.toml +++ b/tutorials/docs-12-using-turing-guide/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "b7d5f57d9eda90053bb4603ac4234cf8d9b7d1b7" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -709,6 +738,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -727,9 +761,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -763,9 +797,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -787,9 +821,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -816,16 +850,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -845,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -863,6 +903,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -882,12 +928,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -896,7 +942,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -973,11 +1019,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -987,6 +1034,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1018,15 +1066,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1036,9 +1084,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1056,10 +1104,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1148,9 +1196,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1182,9 +1230,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1222,9 +1270,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1234,9 +1282,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1305,10 +1353,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1328,9 +1382,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1338,6 +1392,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1393,9 +1457,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1440,9 +1504,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1467,18 +1531,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1486,9 +1555,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1497,15 +1566,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1536,14 +1605,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1572,10 +1647,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1672,9 +1747,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1699,25 +1774,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1746,9 +1824,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1783,9 +1861,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1840,9 +1918,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1858,9 +1936,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2019,9 +2097,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2031,9 +2109,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2097,7 +2175,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml index fcde28eba..a07857a31 100644 --- a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml +++ b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "f00de2f83fe88b91151dd081220b759ce23173e6" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -98,9 +117,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,15 +221,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -262,6 +285,11 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" @@ -338,15 +366,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -385,9 +414,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -426,9 +455,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -495,6 +524,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -513,9 +547,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -555,9 +589,9 @@ version = "1.5.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -572,16 +606,22 @@ uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.7" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LRUCache]] git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" @@ -589,9 +629,15 @@ uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" version = "1.5.0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" + +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" [[deps.Lazy]] deps = ["MacroTools"] @@ -612,12 +658,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -626,7 +672,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -649,11 +695,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -663,6 +710,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -694,15 +742,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -712,9 +760,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -835,9 +883,9 @@ version = "1.6.2" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] @@ -857,10 +905,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -884,6 +938,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -935,9 +999,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -976,9 +1040,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1003,18 +1067,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1022,9 +1091,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1049,14 +1118,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1085,10 +1160,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1173,9 +1248,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1194,9 +1269,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] @@ -1204,9 +1279,9 @@ weakdeps = ["PDMats"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1235,9 +1310,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1267,9 +1342,9 @@ version = "0.1.3" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -1278,9 +1353,9 @@ version = "1.2.13+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -1290,7 +1365,7 @@ version = "5.8.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-14-using-turing-quick-start/Manifest.toml b/tutorials/docs-14-using-turing-quick-start/Manifest.toml index f10c27030..d8bc34aa4 100644 --- a/tutorials/docs-14-using-turing-quick-start/Manifest.toml +++ b/tutorials/docs-14-using-turing-quick-start/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml index 0151bbac4..3d1cf246b 100644 --- a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml +++ b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "d42320247f27a85a88c7c5de8259eefe9da423db" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -37,11 +37,30 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.33" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -110,9 +129,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -202,9 +221,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -231,15 +250,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -259,9 +282,9 @@ version = "0.15.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -331,11 +354,16 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -429,15 +457,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -476,9 +505,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -525,10 +554,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -547,9 +576,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -693,6 +722,11 @@ git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -711,9 +745,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -747,9 +781,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,9 +805,9 @@ version = "2.1.91+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -800,16 +834,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +869,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,6 +887,12 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +[[deps.LatticeRules]] +deps = ["Random"] +git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" +uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" +version = "0.0.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -866,12 +912,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -880,7 +926,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -951,11 +997,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1012,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -996,15 +1044,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1014,9 +1062,9 @@ version = "2023.2.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.3" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1034,10 +1082,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1120,9 +1168,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1154,9 +1202,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1188,15 +1236,15 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.29" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1259,10 +1307,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -1282,9 +1336,9 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -1292,6 +1346,16 @@ git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.9.1" +[[deps.QuasiMonteCarlo]] +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1347,9 +1411,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1394,9 +1458,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,18 +1485,23 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.8.2" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" @@ -1440,9 +1509,9 @@ version = "2.4.0" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1520,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1490,14 +1559,20 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" +[[deps.Sobol]] +deps = ["DelimitedFiles", "Random"] +git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" +uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" +version = "1.5.0" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1526,10 +1601,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1626,9 +1701,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1728,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1700,9 +1778,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.29.3" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1810,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1789,9 +1867,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1807,9 +1885,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1968,9 +2046,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1980,9 +2058,9 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2046,7 +2124,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml index 6a0fc46ca..f0cf99f79 100644 --- a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml +++ b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.9.4" manifest_format = "2.0" project_hash = "6559f27b923d65d4f9f21538db968bd03760e383" [[deps.ADTypes]] -git-tree-sha1 = "f5c25e8a5b29b5e941b7408bc8cc79fea4d9ef9a" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.6" +version = "0.2.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -58,9 +58,9 @@ version = "0.1.33" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -117,9 +117,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -221,9 +221,9 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.58.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] @@ -367,15 +367,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.103" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -414,9 +415,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" +version = "0.23.21" weakdeps = ["MCMCChains"] [deps.DynamicPPL.extensions] @@ -575,9 +576,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -617,9 +618,9 @@ version = "1.5.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.13" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -634,16 +635,22 @@ uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.7" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+1" [[deps.LRUCache]] git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" @@ -651,9 +658,9 @@ uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" version = "1.5.0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Lazy]] deps = ["MacroTools"] @@ -674,12 +681,12 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -688,7 +695,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -717,9 +724,9 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "7841ebecc60703fa978cbe9623e1a37dcaf96b75" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.6.1" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] LogDensityProblemsADADTypesExt = "ADTypes" @@ -764,15 +771,15 @@ version = "1.0.3" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.4" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.8" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -912,9 +919,9 @@ version = "0.3.1" [[deps.Optimization]] deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "f59193f79f8310e5eaad309ccfa8f2fa06b6703b" +git-tree-sha1 = "1aa7ffea6e171167e9cae620d749e16d5874414a" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "3.19.1" +version = "3.19.3" [deps.Optimization.extensions] OptimizationEnzymeExt = "Enzyme" @@ -939,9 +946,9 @@ version = "3.19.1" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] -git-tree-sha1 = "d8a989697ad1037258238004306057ca866bc337" +git-tree-sha1 = "fedb7064e737aefef3382f8bef3a4e464c7cb8eb" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.1.12" +version = "0.1.13" [[deps.OrderedCollections]] git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" @@ -950,9 +957,9 @@ version = "1.6.2" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.28" +version = "0.11.29" [[deps.PSIS]] deps = ["LinearAlgebra", "LogExpFunctions", "Printf", "RecipesBase", "Statistics"] @@ -968,9 +975,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[deps.Pathfinder]] deps = ["Accessors", "Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] @@ -1008,10 +1015,10 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.8" +version = "2.3.0" [[deps.Printf]] deps = ["Unicode"] @@ -1133,9 +1140,9 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1173,9 +1180,9 @@ version = "1.98.1" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1184,9 +1191,9 @@ version = "3.0.0" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1242,10 +1249,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" +version = "1.7.0" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1330,9 +1337,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1357,9 +1364,9 @@ version = "0.1.0" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "b91e3c7039569c7b4525799243a8217f5ed7220f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.29" weakdeps = ["PDMats"] [deps.Tracker.extensions] @@ -1367,9 +1374,9 @@ weakdeps = ["PDMats"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.79" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1435,9 +1442,9 @@ version = "0.1.3" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -1446,9 +1453,9 @@ version = "1.2.13+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -1458,7 +1465,7 @@ version = "5.8.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"]